Os11g0528500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rubredoxin 1 (Rd-1).
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Os11g0528500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rubredoxin 1 (Rd-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.72 | 0.387 | 14.1 | -0.988 | 2.27 | 3.2 | 2.05 | 2.17 | -0.941 | 5.73 | 1.403 | 738 | -- | -- |
| 68.36 | 0.385 | 14.2 | -1.08 | 2.36 | 3.37 | 0.509 | -- | -0.982 | 5.81 | 1.43 | 749 | -- | -- |
| 70.1 | 0.39 | 14.2 | -0.931 | 1.58 | 2.4 | -- | 0.489 | -0.943 | 5.67 | 1.621 | 756 | -- | -- |
| 67.92 | 0.384 | 14.1 | -1.08 | 1.99 | 3 | -- | -- | -0.963 | 6.1 | 1.604 | 780 | -- | -- |
| 77.18 | 0.409 | 14.2 | -0.719 | -- | 0.58 | -- | 0.986 | -0.936 | -- | 39.9 | 2286 | -- | -- |
| 87.05 | 0.437 | 14.2 | -0.867 | 0.224 | -- | -0.198 | -- | -0.841 | 19.4 | -- | -- | -- | -- |
| 87.16 | 0.437 | 14.2 | -0.862 | 0.224 | -- | -- | -- | -0.842 | 19.4 | -- | -- | -- | -- |
| 76.53 | 0.407 | 14.2 | -0.889 | -- | 0.633 | -- | -- | -1.03 | -- | 33.01 | 2227 | -- | -- |
| 96.05 | 0.456 | 14.1 | -- | 1.98 | 2.99 | -- | -- | -0.906 | 5.99 | 1.63 | 773 | -- | -- |
| 89.82 | 0.443 | 14.2 | -0.866 | -- | -- | -- | -- | -0.845 | -- | -- | -- | -- | -- |
| 106.74 | 0.483 | 14.2 | -- | 0.232 | -- | -- | -- | -0.746 | 19.1 | -- | -- | -- | -- |
| 96.91 | 0.458 | 14.2 | -- | -- | 0.595 | -- | -- | -0.87 | -- | 39.86 | 2229 | -- | -- |
| 109.58 | 0.489 | 14.1 | -- | -- | -- | -- | -- | -0.749 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.24 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 65.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 3 | 65.65 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 9 | 65.83 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 10 | 65.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 13 | 66.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 62 | 67.79 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 85 | 68.15 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 87 | 68.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 106 | 68.45 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 165 | 69.18 | radiation | 1 | 720 | > th | dose independent | sin | 0 | NA |
| 176 | 69.31 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 182 | 69.36 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 193 | 69.39 | radiation | 1 | 720 | < th | dose independent | sin | 1 | NA |
| 200 | 69.44 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 253 | 69.51 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 264 | 69.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 267 | 69.65 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 275 | 69.69 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 277 | 69.70 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 23 |
| 281 | 69.72 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 21 |
| 285 | 69.73 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 23 |
| 290 | 69.78 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 297 | 69.81 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 307 | 69.85 | humidity | 60 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 316 | 69.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 319 | 69.91 | humidity | 60 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 321 | 69.93 | humidity | 60 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 323 | 69.94 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 326 | 69.97 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 347 | 70.09 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 391 | 70.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 421 | 70.45 | humidity | 60 | 30 | > th | dose dependent | no | NA | NA |
| 439 | 70.54 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 441 | 70.56 | radiation | 10 | 720 | > th | dose independent | sin | 13 | NA |
| 446 | 70.56 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 450 | 70.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 454 | 70.61 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 457 | 70.62 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 468 | 70.65 | humidity | 60 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 469 | 70.65 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 472 | 70.67 | humidity | 80 | 10 | > th | dose independent | sin | 23 | NA |
| 474 | 70.68 | humidity | 60 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 477 | 70.69 | radiation | 10 | 720 | > th | dose independent | rect. | 13 | 20 |
| 484 | 70.71 | humidity | 60 | 10 | > th | dose dependent | sin | 22 | NA |
| 492 | 70.74 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 12 |
| 495 | 70.74 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 508 | 70.78 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 23 |
| 517 | 70.79 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 18 |
| 537 | 70.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 571 | 70.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 615 | 71.06 | radiation | 20 | 720 | < th | dose dependent | sin | 13 | NA |
| 619 | 71.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 631 | 71.09 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 651 | 71.11 | humidity | 60 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 667 | 71.15 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 23 |
| 722 | 71.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 746 | 71.28 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 755 | 71.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 776 | 71.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 18 |
| 781 | 71.34 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 870 | 71.38 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 943 | 71.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 947 | 71.46 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 19 |
| 967 | 71.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 972 | 71.50 | humidity | 80 | 10 | < th | dose independent | sin | 23 | NA |