BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0528500 Os11g0528500|AK058434
         (151 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51010.1  | chr5:20744615-20745344 FORWARD LENGTH=155          162   7e-41
AT5G17170.1  | chr5:5649335-5650975 FORWARD LENGTH=272             60   5e-10

>AT5G51010.1 | chr5:20744615-20745344 FORWARD LENGTH=155
          Length = 154

 Score =  162 bits (409), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 84/96 (87%)

Query: 55  VASKQAYICRDCGYIYSDRTPFDKLPDKYFCPVCGAPKRRFKPYEPKVAKNANATDARKA 114
           V+SKQAYICRDCGYIY+DRTPFDKLPD YFCPVC APKRRF+ Y P V+KN N  D RKA
Sbjct: 58  VSSKQAYICRDCGYIYNDRTPFDKLPDNYFCPVCAAPKRRFRAYMPDVSKNVNDKDVRKA 117

Query: 115 RKEQLKKDEAVGQALPIGIAVGILALAGLFFYLNSV 150
           RK +L++DEAVG+ALPIGIAVG+LALA L+FY+NS 
Sbjct: 118 RKAELQRDEAVGKALPIGIAVGVLALAALYFYVNST 153



>AT5G17170.1 | chr5:5649335-5650975 FORWARD LENGTH=272
          Length = 271

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 20/87 (22%)

Query: 57  SKQAYICRDCGYIYSDRTPFDKLPDKYFCPVCGAPKRRFKPYEPKVAKNANATDARKARK 116
           ++  +IC DCG+IY+    FD+ PD Y CP C APK+RF  Y+    K            
Sbjct: 193 ARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKKRFAKYDVNTGK------------ 240

Query: 117 EQLKKDEAVGQAL-PIGIAVGILALAG 142
                  A+G  L PIG+ VG+LA  G
Sbjct: 241 -------AIGGGLPPIGVIVGLLAGLG 260



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,265,480
Number of extensions: 84646
Number of successful extensions: 375
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)