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Os11g0524300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1001 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0117) R2 : 0.775
β1 : -0.918 (0.0429) R2dD : 0.235 R2D : 0.209
β2 : 1.01 (0.0299) R2dC : 0.566 R2C : 0.547
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0575 (0.025) R2dN8 : 0.0035 R2N8 : -0.00964
σ : 0.22
deviance : 22.08
__
_____
C
peak time of C : 4.22
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.57 0.208 12.5 -0.901 0.83 -0.404 -0.433 0.0694 -0.0271 6.06 1.654 97 -- --
19.59 0.206 12.5 -0.903 0.827 -0.399 -0.438 -- -0.026 6.01 1.65 99 -- --
20 0.208 12.5 -0.905 0.821 -0.394 -- 0.0798 -0.0278 6 1.745 104 -- --
20.04 0.209 12.5 -0.905 0.821 -0.391 -- -- -0.0275 5.98 1.74 104 -- --
23.15 0.224 12.5 -0.788 -- -1.03 -- 0.507 -0.0105 -- 1.91 555 -- --
21.86 0.219 12.5 -0.921 1.02 -- -0.278 -- -0.059 4.23 -- -- -- --
22.08 0.22 12.5 -0.918 1.01 -- -- -- -0.0575 4.22 -- -- -- --
23 0.223 12.5 -0.864 -- -1.05 -- -- -0.00536 -- 1.403 565 -- --
41.64 0.301 12.4 -- 0.777 -0.426 -- -- 0.0594 6.22 1.099 105 -- --
77.6 0.412 12.5 -0.877 -- -- -- -- -0.0305 -- -- -- -- --
44.29 0.311 12.5 -- 0.996 -- -- -- 0.0448 4.24 -- -- -- --
41.78 0.301 12.5 -- -- -1.01 -- -- 0.045 -- 0.1232 562 -- --
97.91 0.462 12.5 -- -- -- -- -- 0.0668 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.37 temperature 20.0 720 > th dose independent rect. 17 3
3 18.55 temperature 10.0 270 > th dose dependent rect. 17 11
6 18.67 temperature 15.0 270 > th dose independent rect. 17 12
13 18.81 radiation 1.0 720 < th dose independent rect. 24 6
17 18.83 radiation 1.0 720 < th dose dependent rect. 24 6
26 18.99 radiation 10.0 720 < th dose independent rect. 17 4
31 19.04 temperature 15.0 720 > th dose independent rect. 10 10
34 19.09 radiation 10.0 720 < th dose independent rect. 17 11
35 19.09 temperature 15.0 720 > th dose independent rect. 9 12
46 19.16 radiation 30.0 720 < th dose dependent rect. 17 4
55 19.19 humidity 50.0 720 > th dose independent rect. 17 4
58 19.19 humidity 60.0 720 > th dose independent rect. 18 10
62 19.20 atmosphere 1015.0 720 < th dose independent rect. 17 4
66 19.21 radiation 1.0 90 < th dose independent rect. 18 14
73 19.22 humidity 60.0 720 > th dose independent rect. 5 4
74 19.22 temperature 10.0 720 > th dose independent rect. 12 5
75 19.22 atmosphere 1015.0 720 < th dose independent rect. 12 5
78 19.22 temperature 10.0 720 > th dose independent rect. 17 19
79 19.23 temperature 10.0 720 > th dose independent rect. 2 10
80 19.23 temperature 10.0 720 > th dose independent rect. 14 10
81 19.23 atmosphere 995.0 720 > th dose independent rect. 2 10
84 19.23 temperature 10.0 720 > th dose independent rect. 12 14
85 19.23 temperature 10.0 720 > th dose independent rect. 24 14
86 19.23 atmosphere 995.0 720 > th dose independent rect. 24 14
89 19.23 radiation 10.0 30 < th dose dependent rect. 18 14
91 19.24 wind 9.0 720 < th dose independent rect. 24 5
92 19.24 temperature 10.0 720 > th dose independent rect. 24 5
93 19.24 temperature 30.0 720 < th dose independent rect. 24 5
94 19.24 humidity 50.0 720 > th dose independent rect. 24 5
97 19.24 atmosphere 995.0 720 > th dose independent rect. 24 5
98 19.24 radiation 20.0 720 < th dose independent rect. 24 5
103 19.24 temperature 10.0 720 > th dose independent rect. 5 19
109 19.25 wind 7.0 720 < th dose independent rect. 5 4
110 19.25 precipitation 0.1 720 < th dose independent rect. 5 4
111 19.25 wind 9.0 720 < th dose independent rect. 2 10
112 19.25 precipitation 0.1 720 < th dose dependent rect. 5 4
116 19.26 temperature 10.0 720 > th dose independent rect. 5 4
118 19.26 atmosphere 995.0 720 > th dose independent rect. 5 4
119 19.26 atmosphere 1015.0 720 < th dose independent rect. 5 4
123 19.26 temperature 10.0 720 > th dose independent rect. 9 20
126 19.26 radiation 20.0 720 < th dose dependent rect. 17 12
133 19.27 temperature 10.0 720 > th dose independent rect. 21 20
143 19.32 precipitation 0.1 720 < th dose independent rect. 22 10
144 19.32 humidity 50.0 720 > th dose independent rect. 17 12
145 19.32 humidity 50.0 720 > th dose independent rect. 17 19
146 19.32 precipitation 0.1 720 < th dose dependent rect. 22 10
152 19.33 precipitation 0.1 720 < th dose independent rect. 21 20
154 19.33 precipitation 0.1 720 < th dose dependent rect. 21 20
167 19.36 radiation 1.0 720 > th dose independent rect. 9 3
172 19.37 radiation 40.0 720 < th dose independent rect. 5 4
173 19.37 wind 9.0 720 < th dose independent rect. 12 5
175 19.37 wind 9.0 720 < th dose independent rect. 24 14
177 19.38 temperature 20.0 30 > th dose independent rect. 18 20
181 19.39 wind 9.0 720 < th dose independent rect. 17 4
182 19.39 precipitation 0.1 720 < th dose independent rect. 12 5
184 19.39 temperature 10.0 270 > th dose independent rect. 5 12
186 19.39 atmosphere 1015.0 270 < th dose independent rect. 5 12
190 19.39 wind 9.0 720 < th dose independent rect. 17 19
192 19.39 precipitation 0.1 720 < th dose dependent rect. 12 5
198 19.40 humidity 50.0 14400 > th dose independent rect. 19 12
202 19.41 wind 9.0 270 < th dose independent rect. 17 12
205 19.42 temperature 30.0 720 < th dose independent rect. 18 10
213 19.43 precipitation 0.1 270 < th dose independent rect. 5 12
215 19.43 precipitation 0.1 270 < th dose dependent rect. 5 12
216 19.44 temperature 25.0 10 > th dose independent rect. 7 1
218 19.44 precipitation 0.1 720 < th dose independent rect. 9 3
219 19.44 wind 1.0 720 > th dose independent rect. 14 10
222 19.44 atmosphere 1015.0 270 < th dose independent rect. 1 11
224 19.44 precipitation 0.1 720 < th dose dependent rect. 9 3
226 19.45 wind 9.0 720 < th dose independent rect. 9 3
227 19.45 wind 1.0 720 > th dose independent rect. 12 5
231 19.46 wind 9.0 720 < th dose independent rect. 14 10
233 19.46 wind 9.0 270 < th dose independent rect. 12 13
239 19.47 wind 9.0 720 < th dose independent rect. 21 3
240 19.47 temperature 10.0 720 > th dose independent rect. 9 3
241 19.47 atmosphere 995.0 720 > th dose independent rect. 9 3
242 19.47 atmosphere 1015.0 720 < th dose independent rect. 9 3
248 19.47 wind 9.0 270 < th dose independent rect. 5 12
250 19.47 temperature 10.0 720 > th dose independent rect. 12 21
253 19.47 radiation 10.0 90 < th dose dependent rect. 18 19
254 19.48 wind 7.0 720 < th dose independent rect. 22 10
260 19.48 radiation 1.0 90 < th dose independent rect. 18 23
264 19.49 temperature 10.0 720 > th dose independent rect. 21 3
265 19.49 temperature 30.0 720 < th dose independent rect. 21 3
266 19.49 humidity 50.0 720 > th dose independent rect. 21 3
269 19.49 atmosphere 995.0 720 > th dose independent rect. 21 3
270 19.49 radiation 1.0 720 < th dose independent rect. 21 3
276 19.49 temperature 20.0 90 > th dose independent rect. 10 13
277 19.49 radiation 30.0 720 < th dose independent rect. 16 14
278 19.49 temperature 10.0 720 > th dose independent rect. 24 21
279 19.49 radiation 1.0 720 < th dose dependent rect. 21 3
286 19.50 atmosphere 1010.0 720 < th dose independent rect. 18 1
287 19.50 wind 1.0 720 > th dose independent rect. 21 3
288 19.50 precipitation 0.1 720 < th dose independent rect. 21 3
304 19.50 precipitation 0.1 720 < th dose independent rect. 24 21
306 19.50 precipitation 0.1 720 < th dose dependent rect. 21 3
312 19.50 precipitation 0.1 720 < th dose dependent rect. 24 21
322 19.52 humidity 50.0 720 > th dose independent rect. 9 3
339 19.52 precipitation 0.1 720 < th dose independent rect. 20 14
346 19.52 precipitation 0.1 720 < th dose dependent rect. 20 14
350 19.53 radiation 30.0 720 < th dose independent rect. 22 10
353 19.53 wind 1.0 270 > th dose independent rect. 12 13
359 19.54 temperature 30.0 720 < th dose independent rect. 5 4
365 19.54 atmosphere 1015.0 270 < th dose independent rect. 8 13
366 19.54 temperature 10.0 720 > th dose independent rect. 4 14
368 19.54 humidity 50.0 720 > th dose independent rect. 24 14
369 19.54 atmosphere 1015.0 720 < th dose independent rect. 4 14
376 19.55 humidity 60.0 720 > th dose independent rect. 18 1
381 19.55 temperature 10.0 720 > th dose independent rect. 6 10
383 19.55 atmosphere 1015.0 720 < th dose independent rect. 6 10
393 19.56 atmosphere 995.0 270 > th dose independent rect. 17 12
394 19.56 atmosphere 1010.0 90 < th dose independent rect. 18 12
395 19.56 wind 9.0 720 < th dose independent rect. 20 14
402 19.57 wind 1.0 720 > th dose independent rect. 17 4
404 19.57 humidity 50.0 720 > th dose independent rect. 2 10
415 19.58 humidity 70.0 720 > th dose independent rect. 22 9
417 19.58 temperature 10.0 720 > th dose independent rect. 22 10
418 19.58 temperature 30.0 720 < th dose independent rect. 22 10
419 19.58 humidity 50.0 720 > th dose independent rect. 22 10
421 19.58 atmosphere 995.0 720 > th dose independent rect. 22 10
427 19.58 humidity 50.0 720 > th dose independent rect. 20 14
437 19.59 atmosphere 1015.0 720 < th dose independent rect. 10 10
438 19.59 temperature 10.0 720 > th dose independent rect. 20 14
439 19.59 atmosphere 995.0 720 > th dose independent rect. 20 14
444 19.60 wind 9.0 720 < th dose independent rect. 18 10
449 19.60 wind 9.0 720 < th dose independent rect. 5 19
451 19.60 wind 9.0 720 < th dose independent rect. 21 20
452 19.60 temperature 20.0 10 < th dose dependent sin 14 NA
473 19.61 atmosphere 995.0 720 > th dose independent rect. 17 19
480 19.62 radiation 1.0 720 < th dose independent rect. 18 1
481 19.62 precipitation 0.1 720 < th dose independent rect. 24 5
489 19.62 wind 9.0 720 < th dose dependent rect. 21 3
490 19.62 precipitation 0.1 720 < th dose dependent rect. 24 5
496 19.62 temperature 20.0 10 < th dose dependent rect. 12 16
520 19.63 precipitation 0.1 720 < th dose independent rect. 12 21
522 19.63 temperature 20.0 30 < th dose dependent rect. 19 9
525 19.63 temperature 20.0 30 < th dose dependent rect. 15 13
526 19.63 temperature 20.0 90 < th dose dependent rect. 13 14
533 19.63 precipitation 0.1 720 < th dose dependent rect. 12 21
534 19.64 precipitation 0.1 720 < th dose independent rect. 17 4
542 19.64 wind 9.0 720 < th dose independent rect. 21 12
561 19.64 precipitation 0.1 720 < th dose dependent rect. 17 4
600 19.65 temperature 15.0 270 > th dose dependent rect. 17 4
615 19.66 wind 1.0 720 > th dose independent rect. 9 3
626 19.66 temperature 20.0 90 > th dose independent rect. 10 19
631 19.66 wind 1.0 4320 < th dose dependent rect. 2 1
651 19.67 precipitation 0.1 270 < th dose independent rect. 12 13
657 19.67 temperature 20.0 10 < th dose dependent rect. 19 7
681 19.67 precipitation 0.1 270 < th dose dependent rect. 12 13
694 19.68 atmosphere 995.0 90 > th dose independent rect. 10 12
723 19.69 wind 1.0 720 > th dose independent rect. 24 5
743 19.70 precipitation 0.1 270 < th dose independent rect. 8 13
754 19.70 precipitation 0.1 270 < th dose dependent rect. 8 13
767 19.71 precipitation 0.1 720 < th dose independent rect. 2 10
773 19.71 radiation 1.0 90 > th dose independent rect. 5 13
774 19.71 precipitation 0.1 720 < th dose independent rect. 24 14
776 19.71 temperature 10.0 720 > th dose dependent rect. 5 3
782 19.71 precipitation 0.1 720 < th dose dependent rect. 2 10
787 19.71 precipitation 0.1 720 < th dose dependent rect. 24 14
790 19.71 temperature 20.0 10 < th dose dependent rect. 12 22
801 19.72 wind 9.0 90 < th dose independent rect. 10 12
838 19.73 humidity 50.0 14400 > th dose independent rect. 19 4
841 19.73 precipitation 0.1 720 < th dose independent rect. 6 10
851 19.73 atmosphere 1015.0 90 < th dose independent rect. 10 12
853 19.73 radiation 1.0 720 > th dose independent rect. 18 14
864 19.73 precipitation 0.1 720 < th dose dependent rect. 6 10
871 19.73 temperature 20.0 10 < th dose dependent rect. 19 15
876 19.73 temperature 20.0 10 < th dose dependent rect. 15 19
916 19.74 atmosphere 995.0 720 > th dose independent rect. 18 10
920 19.74 precipitation 0.1 270 < th dose independent rect. 17 12
941 19.74 precipitation 0.1 270 < th dose dependent rect. 17 12
973 19.75 precipitation 0.1 90 < th dose independent rect. 10 12
974 19.75 precipitation 0.1 720 < th dose independent rect. 5 19
983 19.75 precipitation 0.1 90 < th dose dependent rect. 10 12
993 19.75 precipitation 0.1 720 < th dose dependent rect. 5 19