BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0524300 Os11g0524300|AK106093
         (275 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51020.1  | chr5:20745560-20747165 REVERSE LENGTH=270          359   1e-99

>AT5G51020.1 | chr5:20745560-20747165 REVERSE LENGTH=270
          Length = 269

 Score =  359 bits (921), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 191/228 (83%)

Query: 47  STTRWDHARAVVDALSGEKFSREQARKDPDNYFNLRMLTCPATEMVDGSRVLYFEQAFWR 106
           STTR DHAR V  +L+GEKF+REQA +DPDNYFN+RML+CPA EMVDGS VLY EQAFWR
Sbjct: 42  STTRRDHARVVSRSLTGEKFTREQASRDPDNYFNIRMLSCPAAEMVDGSEVLYLEQAFWR 101

Query: 107 SPEKPFRQRFYMVKPCPKDMKCDVELSSYAIRDVEEYKNFCDRPKDQRPQPEEVIADIAE 166
           +P+KPFRQR YMVKPCPK++KCDVE+SSYAIRD EEYKNFCDRPKDQRP PEEVI DI E
Sbjct: 102 TPQKPFRQRLYMVKPCPKELKCDVEVSSYAIRDAEEYKNFCDRPKDQRPLPEEVIGDIGE 161

Query: 167 HLTTIHLSRCERGKRCLYKGSTPPEGFPNSWSGATYCTSDLSIHKNGEVHIWDKGFDDDG 226
           HLTTIHL+ C+RGKRCLY+GST P GFPNSW+GA+YCTSDL++ KN E+H+WD+GFD++ 
Sbjct: 162 HLTTIHLNCCDRGKRCLYEGSTSPGGFPNSWNGASYCTSDLAVLKNNEIHLWDRGFDENR 221

Query: 227 NQVWGTKAGPYEFKPAPKSNYDDMFSPLNFSAPLTLEKKIESSFAIDD 274
           NQVWG K GPYEFKPA  S+ ++  S LN     +++K I+ S  + D
Sbjct: 222 NQVWGPKEGPYEFKPATSSSINENLSALNILYQSSIDKPIQGSLILQD 269



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,210,919
Number of extensions: 292661
Number of successful extensions: 565
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)