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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0514000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATP-binding region, ATPase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.32 (0.0367) R2 : 0.548
β1 : 2.77 (0.135) R2dD : 0.438 R2D : 0.392
β2 : -- (--) R2dC : -- R2C : --
β3 : 7.32 (0.669) R2dE : 0.183 R2E : -0.0489
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.2 (1.66) R2dD*E : 0.128 R2D*E : -0.0185
γ1 : 0.378 (0.0783) R2dN8 : 0.0309 R2N8 : -0.018
σ : 0.685
deviance : 216.24
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.69
memory length : 67
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.5
open length of G : 0.417

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.32 0.688 5.32 2.8 0.169 6.61 0.696 13.8 0.381 2.42 23 70 8.47 0.417
256.27 0.746 5.28 2.74 0.159 4.76 0.952 -- 0.436 1.85 23.21 67 8.27 0.618
215.19 0.683 5.32 2.8 0.169 7.04 -- 14.3 0.395 2.38 22.77 69 8.47 0.417
252.43 0.74 5.28 2.87 0.153 3.58 -- -- 0.412 0.632 23.55 67 8.28 0.633
216.24 0.685 5.32 2.77 -- 7.32 -- 15.2 0.378 -- 22.69 67 8.5 0.417
275.41 0.778 5.31 2.75 0.147 -- 0.766 -- 0.355 4.19 -- -- -- --
277.05 0.779 5.31 2.74 0.152 -- -- -- 0.351 4.11 -- -- -- --
253.91 0.742 5.3 2.86 -- 3.43 -- -- 0.403 -- 23.49 67 8.27 0.619
464.29 1 5.36 -- 0.163 2.88 -- -- 0.0954 1.46 22.32 67 8.41 0.583
278.3 0.78 5.31 2.75 -- -- -- -- 0.355 -- -- -- -- --
475.59 1.02 5.38 -- 0.205 -- -- -- 0.045 3.88 -- -- -- --
464.77 1 5.38 -- -- 3.09 -- -- 0.0799 -- 22 64 8.38 0.568
477.89 1.02 5.38 -- -- -- -- -- 0.0496 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.11 temperature 25 90 < th dose dependent rect. 8 1
14 237.67 humidity 80 270 < th dose dependent rect. 6 1
15 238.33 humidity 80 270 < th dose independent rect. 6 1
16 239.29 temperature 20 90 < th dose independent rect. 8 1
29 243.76 humidity 80 1440 > th dose independent rect. 5 2
33 244.35 radiation 10 43200 < th dose independent rect. 12 2
34 244.51 wind 7 43200 < th dose independent rect. 23 2
38 245.06 humidity 80 43200 > th dose dependent rect. 6 2
40 245.30 radiation 20 14400 > th dose independent rect. 17 14
41 245.31 radiation 20 14400 > th dose independent rect. 6 1
56 245.48 wind 5 43200 > th dose dependent rect. 24 1
58 245.55 radiation 10 43200 < th dose independent rect. 11 19
59 245.56 wind 7 43200 > th dose independent rect. 23 2
60 245.59 radiation 10 43200 < th dose independent rect. 9 21
71 245.75 wind 5 14400 > th dose dependent rect. 18 2
72 245.77 radiation 1 43200 < th dose independent rect. 3 3
82 245.81 radiation 1 43200 < th dose independent rect. 20 10
90 245.84 radiation 1 43200 > th dose independent rect. 4 2
102 245.85 radiation 10 43200 < th dose independent rect. 11 8
112 245.87 radiation 10 43200 < th dose independent sin 20 NA
121 245.93 radiation 10 43200 < th dose independent rect. 9 10
157 245.98 radiation 10 43200 < th dose independent sin 15 NA
160 245.99 radiation 10 43200 < th dose independent rect. 4 14
201 246.00 radiation 10 43200 < th dose independent no NA NA
228 246.01 radiation 10 43200 < th dose independent rect. 15 23
231 246.02 radiation 10 43200 < th dose dependent rect. 13 1
248 246.07 wind 7 14400 < th dose independent rect. 18 1
295 246.21 wind 1 14400 > th dose independent rect. 7 1
302 246.27 radiation 10 43200 < th dose independent rect. 15 15
313 246.37 wind 1 14400 > th dose independent rect. 24 2
315 246.37 radiation 10 43200 < th dose independent rect. 15 4
317 246.37 radiation 10 43200 < th dose independent rect. 15 6
330 246.43 wind 7 14400 < th dose independent rect. 16 4
353 246.49 radiation 30 43200 < th dose independent sin 13 NA
460 246.89 wind 1 14400 < th dose dependent rect. 24 3
462 246.91 wind 7 14400 > th dose independent rect. 16 4
469 246.95 wind 3 14400 < th dose dependent rect. 7 1
514 247.08 radiation 1 43200 > th dose dependent rect. 17 13
516 247.10 wind 1 14400 < th dose independent rect. 7 2
528 247.16 wind 1 14400 < th dose independent rect. 24 2
544 247.19 radiation 10 43200 > th dose dependent rect. 16 15
569 247.29 humidity 90 43200 < th dose independent rect. 11 4
596 247.38 wind 1 14400 < th dose dependent rect. 21 11
642 247.50 atmosphere 1015 43200 < th dose independent rect. 19 5
646 247.50 radiation 1 43200 > th dose dependent rect. 13 1
648 247.51 radiation 30 43200 < th dose independent rect. 15 23
653 247.53 wind 9 14400 < th dose dependent rect. 16 16
689 247.57 radiation 30 43200 < th dose independent rect. 6 11
700 247.57 radiation 30 43200 < th dose independent rect. 18 23
701 247.58 radiation 30 43200 < th dose independent no NA NA
799 247.61 atmosphere 1015 43200 < th dose independent rect. 19 2
802 247.61 atmosphere 1015 43200 > th dose independent rect. 19 4
822 247.62 radiation 30 43200 > th dose dependent rect. 15 17
825 247.63 wind 1 14400 > th dose dependent rect. 16 16
829 247.65 radiation 10 43200 > th dose independent rect. 17 1
847 247.66 wind 1 14400 < th dose dependent rect. 7 3
848 247.67 atmosphere 1015 43200 < th dose independent rect. 22 1
849 247.67 atmosphere 1015 43200 < th dose independent rect. 21 3
884 247.72 radiation 20 43200 < th dose dependent rect. 5 1
886 247.73 atmosphere 1015 43200 > th dose independent rect. 22 1
891 247.73 radiation 20 43200 > th dose dependent rect. 13 1
907 247.76 radiation 1 14400 > th dose independent rect. 15 1
930 247.78 radiation 40 43200 < th dose dependent rect. 2 4
950 247.83 humidity 50 43200 > th dose independent rect. 16 1