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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0502200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Integrase, catalytic region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.84 (0.518) R2 : 0.118
β1 : 18 (2.49) R2dD : 26 R2D : -46.4
β2 : -- (--) R2dC : -- R2C : --
β3 : 146 (19.8) R2dE : 731 R2E : -746
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 701 (95.7) R2dD*E : 734 R2D*E : -719
γ1 : -0.0585 (0.0926) R2dN8 : 0.00105 R2N8 : -19.4
σ : 0.806
deviance : 299.51
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.986
memory length : 1442
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.98
open length of G : 1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
298.09 0.804 6.84 18 0.146 146 0.168 701 -0.0566 13.4 7 1442 3 1
335.16 0.859 3.07 -0.343 0.0874 -0.512 0.359 -- -0.0817 12.5 7 1442 3 1
298.19 0.804 6.84 18 0.145 146 -- 700 -0.0561 13.8 6.987 1442 2.99 1.02
333.3 0.85 3.06 -0.284 0.0856 0.383 -- -- -0.0513 13.7 7.118 2663 2.59 0.831
299.51 0.806 6.84 18 -- 146 -- 701 -0.0585 -- 6.986 1442 2.98 1
335.42 0.859 3.07 -0.338 0.0903 -- 0.349 -- -0.0797 12.5 -- -- -- --
335.9 0.858 3.07 -0.324 0.0946 -- -- -- -0.0773 13.7 -- -- -- --
333.6 0.851 3.06 -0.299 -- 0.406 -- -- -0.054 -- 7.2 6297 2.58 0.817
335.13 0.853 3.06 -- 0.0881 0.466 -- -- -0.0274 13.5 6.832 2717 2.47 0.333
336.44 0.857 3.07 -0.328 -- -- -- -- -0.0794 -- -- -- -- --
338.67 0.861 3.06 -- 0.101 -- -- -- -0.0412 13.8 -- -- -- --
331.18 0.848 3.05 -- -- 1.3 -- -- -0.00936 -- 7.306 7949 2.27 0.767
339.28 0.86 3.06 -- -- -- -- -- -0.043 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 298.09 wind 7.0 1440 > th dose independent rect. 2 1
4 298.09 wind 7.0 1440 > th dose dependent rect. 3 1
11 299.02 wind 1.0 10 < th dose dependent rect. 1 1
28 303.81 wind 1.0 10 < th dose dependent rect. 11 15
30 303.85 humidity 80.0 30 < th dose dependent rect. 1 3
35 304.06 wind 1.0 10 < th dose independent rect. 1 1
38 304.24 humidity 80.0 30 < th dose independent rect. 1 1
41 304.24 humidity 80.0 30 < th dose dependent rect. 1 1
68 305.26 atmosphere 1005.0 10 > th dose independent rect. 1 1
103 309.08 wind 1.0 10 < th dose independent rect. 11 15
110 309.84 wind 1.0 270 < th dose dependent rect. 21 2
136 312.62 wind 7.0 10 < th dose independent rect. 2 23
153 314.50 atmosphere 1000.0 10 > th dose dependent rect. 1 1
160 315.32 wind 1.0 270 < th dose dependent rect. 16 7
168 315.99 wind 1.0 270 < th dose independent rect. 21 2
178 316.80 wind 5.0 1440 < th dose independent rect. 8 2
179 316.83 wind 5.0 1440 > th dose independent rect. 8 2
180 316.97 wind 5.0 1440 > th dose dependent rect. 8 2
184 317.12 wind 7.0 270 < th dose independent rect. 11 22
211 317.71 wind 9.0 30 < th dose dependent rect. 2 23
232 318.11 precipitation 0.1 14400 < th dose independent rect. 20 5
233 318.11 precipitation 0.1 14400 < th dose dependent rect. 20 5
234 318.12 precipitation 0.1 14400 > th dose independent rect. 20 5
239 318.19 wind 7.0 10 > th dose independent rect. 19 20
261 318.55 wind 7.0 10 < th dose independent rect. 13 23
267 318.63 precipitation 0.1 14400 > th dose dependent rect. 21 3
268 318.65 wind 1.0 10 < th dose dependent sin 17 NA
269 318.65 temperature 20.0 10 > th dose dependent rect. 16 18
287 318.94 wind 1.0 14400 > th dose independent rect. 21 2
293 318.98 wind 9.0 720 > th dose independent rect. 18 20
294 318.98 wind 9.0 720 > th dose dependent rect. 18 21
305 319.06 precipitation 0.1 14400 > th dose dependent rect. 20 7
325 319.29 wind 1.0 10 < th dose independent rect. 8 18
334 319.37 wind 7.0 90 > th dose dependent rect. 18 17
341 319.42 wind 7.0 10 > th dose dependent rect. 19 20
372 319.67 wind 7.0 720 < th dose independent rect. 5 9
377 319.74 wind 7.0 90 > th dose independent rect. 19 16
387 319.80 temperature 15.0 4320 > th dose independent rect. 11 3
405 319.97 temperature 30.0 4320 < th dose independent rect. 13 1
419 320.05 wind 9.0 720 > th dose dependent rect. 9 6
439 320.14 temperature 30.0 4320 < th dose independent rect. 11 5
446 320.18 wind 7.0 90 > th dose independent rect. 17 5
449 320.19 wind 1.0 43200 < th dose dependent rect. 1 3
462 320.22 wind 7.0 10 < th dose independent rect. 3 15
468 320.25 temperature 30.0 4320 < th dose independent rect. 2 14
470 320.25 temperature 30.0 4320 < th dose independent rect. 20 20
471 320.25 wind 5.0 30 < th dose independent rect. 13 21
474 320.26 wind 9.0 720 > th dose independent sin 7 NA
480 320.26 wind 9.0 720 > th dose dependent sin 7 NA
482 320.27 temperature 30.0 4320 < th dose independent rect. 5 11
490 320.30 wind 9.0 720 > th dose independent rect. 1 13
496 320.31 wind 9.0 720 > th dose independent rect. 9 5
525 320.39 wind 1.0 43200 < th dose dependent rect. 3 1
530 320.42 radiation 1.0 4320 < th dose dependent rect. 22 7
532 320.43 wind 7.0 90 > th dose independent rect. 18 20
533 320.44 wind 7.0 270 < th dose independent rect. 12 10
534 320.44 wind 9.0 720 < th dose independent rect. 2 15
548 320.50 wind 9.0 270 > th dose dependent sin 10 NA
551 320.51 temperature 20.0 10 > th dose dependent rect. 14 20
556 320.54 temperature 30.0 4320 < th dose independent rect. 13 14
558 320.54 temperature 30.0 4320 < th dose independent rect. 13 21
559 320.54 radiation 1.0 4320 < th dose dependent rect. 24 5
562 320.55 wind 7.0 90 > th dose independent rect. 17 7
563 320.55 temperature 25.0 4320 > th dose dependent rect. 8 1
566 320.56 temperature 30.0 4320 < th dose independent rect. 13 17
568 320.57 wind 9.0 720 > th dose independent rect. 11 2
569 320.57 temperature 30.0 4320 < th dose independent rect. 13 8
571 320.57 temperature 30.0 4320 < th dose independent rect. 13 10
579 320.58 temperature 30.0 4320 > th dose independent rect. 11 5
586 320.58 atmosphere 995.0 10 > th dose independent rect. 2 23
599 320.62 wind 7.0 720 < th dose independent rect. 11 3
603 320.63 wind 9.0 720 < th dose independent sin 7 NA
620 320.66 wind 7.0 720 < th dose independent rect. 20 18
621 320.67 wind 7.0 10 > th dose dependent sin 9 NA
623 320.68 temperature 30.0 4320 < th dose independent rect. 11 16
643 320.71 temperature 30.0 4320 < th dose independent rect. 11 10
675 320.74 temperature 30.0 4320 < th dose independent sin 22 NA
680 320.75 temperature 30.0 30 < th dose dependent rect. 17 13
698 320.77 temperature 30.0 4320 > th dose independent rect. 13 1
726 320.81 radiation 20.0 4320 > th dose independent rect. 16 15
768 320.85 temperature 30.0 4320 > th dose independent rect. 13 3
770 320.86 radiation 10.0 1440 > th dose independent rect. 5 4
807 320.88 temperature 20.0 10 > th dose dependent sin 11 NA
835 320.92 temperature 30.0 4320 < th dose independent rect. 2 19
865 320.94 temperature 30.0 4320 < th dose independent no NA NA
871 320.94 temperature 30.0 4320 < th dose independent rect. 5 16
891 320.94 temperature 25.0 4320 > th dose dependent rect. 3 6
920 320.96 temperature 30.0 4320 > th dose independent rect. 13 21
933 320.97 wind 5.0 10 > th dose dependent rect. 20 5
948 320.98 radiation 1.0 4320 < th dose dependent rect. 4 1
949 320.98 temperature 25.0 4320 > th dose dependent rect. 1 9
974 321.00 wind 5.0 90 > th dose dependent rect. 18 20
975 321.00 temperature 15.0 270 > th dose dependent rect. 13 20
996 321.06 wind 7.0 90 < th dose independent rect. 2 15