BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0502200 Os11g0502200|Os11g0502200
         (710 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48050.1  | chr5:19472661-19473770 REVERSE LENGTH=370          104   1e-22
AT1G34070.1  | chr1:12402283-12403209 FORWARD LENGTH=309           99   6e-21

>AT5G48050.1 | chr5:19472661-19473770 REVERSE LENGTH=370
          Length = 369

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 76/121 (62%)

Query: 160 LYGTISADLLQEVMSATATAYSVWRDLAHQFLGNQERRAINLNVEFRTFAQGDPSISDYC 219
           +YGTI+  LL  ++    TA  +W  L + F  N+E RA+    E RT    D S+ +YC
Sbjct: 78  IYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYC 137

Query: 220 RLLKSMADMLGDLGEPVHDRSLVLQHLTGLSPKFGHMQSLLSMQKPFPSFLDARSQLLLE 279
           + LKS++D+L ++  P+ DR LV+  L GL+ K+ ++ +++  + PFPSF +ARS LL+E
Sbjct: 138 QKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLME 197

Query: 280 E 280
           E
Sbjct: 198 E 198



>AT1G34070.1 | chr1:12402283-12403209 FORWARD LENGTH=309
          Length = 308

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 83/131 (63%), Gaps = 1/131 (0%)

Query: 160 LYGTISADLLQEVMSATATAYSVWRDLAHQFLGNQERRAINLNVEFRTFAQGDPSISDYC 219
           LYGT++    Q     ++T+  +W  + +QF  N++ RA+ L+ E RT   GD  ++DY 
Sbjct: 76  LYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYY 135

Query: 220 RLLKSMADMLGDLGEPVHDRSLVLQHLTGLSPKFGHMQSLLSMQKPFPSFLDARSQLLLE 279
           R +K +AD L ++  PV DR+LV+  L GL+PKF ++ +++  ++PFPSF DA + +L E
Sbjct: 136 RKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDA-ATMLQE 194

Query: 280 EITKGSKSVEP 290
           E  +  ++++P
Sbjct: 195 EEDRLKRAIKP 205



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,819,095
Number of extensions: 435876
Number of successful extensions: 1107
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 2
Length of query: 710
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 604
Effective length of database: 8,200,473
Effective search space: 4953085692
Effective search space used: 4953085692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)