Os11g0490800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Spermidine/putrescine import ATP-binding protein potA (EC 3.6.3.31).
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Os11g0490800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Spermidine/putrescine import ATP-binding protein potA (EC 3.6.3.31).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.3 | 0.279 | 10.4 | -0.214 | 0.51 | -1.18 | -0.153 | -0.574 | 0.0124 | 18 | 19.35 | 723 | -- | -- |
| 35.55 | 0.278 | 10.4 | -0.102 | 0.5 | -1.21 | -0.305 | -- | 0.0484 | 18 | 19.13 | 722 | -- | -- |
| 35.31 | 0.277 | 10.4 | -0.22 | 0.509 | -1.18 | -- | -0.628 | 0.0148 | 18 | 19.14 | 713 | -- | -- |
| 35.7 | 0.278 | 10.4 | -0.0796 | 0.54 | -1.23 | -- | -- | 0.0504 | 18 | 19.1 | 691 | -- | -- |
| 38.47 | 0.289 | 10.4 | -0.23 | -- | -1.03 | -- | -0.808 | 5.57e-05 | -- | 18.24 | 2520 | -- | -- |
| 63.85 | 0.375 | 10.4 | -0.415 | 0.3 | -- | -0.145 | -- | -0.173 | 15.3 | -- | -- | -- | -- |
| 63.91 | 0.374 | 10.4 | -0.418 | 0.298 | -- | -- | -- | -0.174 | 15.1 | -- | -- | -- | -- |
| 38.6 | 0.289 | 10.4 | -0.0215 | -- | -1.02 | -- | -- | 0.0512 | -- | 19.6 | 2544 | -- | -- |
| 35.84 | 0.279 | 10.4 | -- | 0.531 | -1.26 | -- | -- | 0.0637 | 18 | 18.92 | 708 | -- | -- |
| 68.98 | 0.388 | 10.4 | -0.431 | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
| 68.52 | 0.387 | 10.4 | -- | 0.306 | -- | -- | -- | -0.127 | 15.1 | -- | -- | -- | -- |
| 38.6 | 0.289 | 10.4 | -- | -- | -1.03 | -- | -- | 0.0581 | -- | 19.6 | 2528 | -- | -- |
| 73.87 | 0.401 | 10.4 | -- | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.23 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 34.25 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 20 | 34.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 23 | 34.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 47 | 35.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 49 | 35.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 65 | 35.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 94 | 35.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 101 | 35.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 105 | 35.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 111 | 35.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 123 | 35.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 130 | 35.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 133 | 35.51 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 134 | 35.51 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 139 | 35.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 15 |
| 180 | 35.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 245 | 35.76 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 265 | 35.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 402 | 36.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 19 |
| 480 | 36.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 490 | 36.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 594 | 36.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 610 | 36.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 642 | 36.45 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |
| 762 | 36.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 778 | 36.58 | temperature | 10 | 1440 | > th | dose dependent | sin | 6 | NA |
| 915 | 36.69 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |