Os11g0484500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 6-phosphogluconate dehydrogenase.
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Os11g0484500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 6-phosphogluconate dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.66 | 0.437 | 13 | 1.35 | 1.95 | 3.26 | 0.742 | -0.891 | 0.232 | 21 | 0.91 | 264 | 20 | -- |
| 88.56 | 0.438 | 13 | 1.37 | 1.93 | 3.31 | 1.39 | -- | 0.23 | 21.2 | 0.94 | 259 | 19.8 | -- |
| 87.75 | 0.436 | 13 | 1.36 | 1.98 | 3.24 | -- | -1.18 | 0.246 | 20.9 | 0.91 | 259 | 20.1 | -- |
| 95.7 | 0.456 | 13 | 1.31 | 1.93 | 3.25 | -- | -- | 0.237 | 21 | 0.978 | 259 | 19.9 | -- |
| 140.05 | 0.551 | 13 | 1.47 | -- | 3.11 | -- | -0.633 | 0.228 | -- | -0.004368 | 672 | 20.2 | -- |
| 140 | 0.555 | 13 | 1.45 | 3.11 | -- | -0.688 | -- | 0.237 | 15.4 | -- | -- | -- | -- |
| 141.49 | 0.557 | 13 | 1.44 | 3.11 | -- | -- | -- | 0.233 | 15.4 | -- | -- | -- | -- |
| 130.77 | 0.533 | 13 | 1.23 | -- | 3.36 | -- | -- | 0.142 | -- | 0.3531 | 567 | 20.6 | -- |
| 139.09 | 0.549 | 13.1 | -- | 1.96 | 3.35 | -- | -- | 0.0729 | 21.4 | 0.4121 | 265 | 19.7 | -- |
| 685.17 | 1.22 | 13 | 1.31 | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
| 196.28 | 0.655 | 13 | -- | 3.08 | -- | -- | -- | 0.0722 | 15.4 | -- | -- | -- | -- |
| 169.74 | 0.607 | 13 | -- | -- | 3.29 | -- | -- | 0.0128 | -- | 0.18 | 548 | 20.1 | -- |
| 730.46 | 1.26 | 13 | -- | -- | -- | -- | -- | 0.00532 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.07 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 2 | 87.15 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 4 | 88.72 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 5 | 88.93 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 8 | 89.27 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 11 | 90.06 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 12 | 90.19 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 13 | 90.25 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 31 | 92.78 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 22 |
| 37 | 93.52 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 19 |
| 64 | 95.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 66 | 95.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 75 | 96.03 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 81 | 96.24 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 85 | 96.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 87 | 96.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 89 | 96.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 90 | 96.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 113 | 97.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 122 | 97.51 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 132 | 97.89 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 140 | 98.14 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 141 | 98.18 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 179 | 98.97 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 194 | 99.28 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 197 | 99.34 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 203 | 99.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 205 | 99.40 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 206 | 99.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 209 | 99.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 211 | 99.40 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 214 | 99.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 215 | 99.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 226 | 99.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 229 | 99.59 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 253 | 99.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 256 | 99.83 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 257 | 99.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 259 | 99.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 263 | 99.92 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 266 | 99.99 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 270 | 100.06 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 272 | 100.08 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 283 | 100.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 288 | 100.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 290 | 100.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 291 | 100.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 294 | 100.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 295 | 100.23 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 297 | 100.23 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 300 | 100.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 301 | 100.24 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 303 | 100.26 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 318 | 100.38 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 320 | 100.39 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 329 | 100.43 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 397 | 100.85 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 405 | 101.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 407 | 101.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 414 | 101.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 415 | 101.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 418 | 101.21 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 419 | 101.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 420 | 101.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 423 | 101.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 13 |
| 424 | 101.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 458 | 101.33 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 22 | 14 |
| 466 | 101.47 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 471 | 101.53 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 473 | 101.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 514 | 102.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 515 | 102.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 516 | 102.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 521 | 102.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 547 | 102.32 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 561 | 102.35 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 595 | 102.58 | wind | 7.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 597 | 102.59 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 606 | 102.66 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 608 | 102.66 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 609 | 102.66 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 611 | 102.66 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 612 | 102.66 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 613 | 102.66 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 618 | 102.72 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 642 | 102.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 644 | 102.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 654 | 102.92 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 670 | 103.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 695 | 103.08 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 705 | 103.16 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 728 | 103.34 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 744 | 103.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 769 | 103.66 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 800 | 103.86 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 807 | 103.90 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 815 | 103.95 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 838 | 104.04 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 844 | 104.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 861 | 104.27 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 875 | 104.43 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 883 | 104.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 888 | 104.49 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 889 | 104.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 892 | 104.49 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 894 | 104.49 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 895 | 104.49 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 897 | 104.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 905 | 104.53 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 19 |
| 928 | 104.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 934 | 104.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 937 | 104.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 938 | 104.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 961 | 104.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 962 | 104.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 971 | 104.94 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 973 | 104.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 978 | 104.95 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 982 | 104.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 18 |