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Os11g0484400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thymidylate synthase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.94 (0.0182) R2 : 0.496
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.923 (0.0436) R2dC : 0.497 R2C : 0.494
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0423 (0.0382) R2dN8 : 0.00175 R2N8 : -0.000664
σ : 0.342
deviance : 53.53
__
_____
C
peak time of C : 10.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.77 0.289 7.96 -0.358 0.897 -0.661 0.518 0.285 -0.153 10.5 48 4261 -- --
37.17 0.284 7.97 -0.387 0.896 -0.807 0.467 -- -0.159 10.6 48 5235 -- --
38.84 0.29 7.96 -0.334 0.895 -0.688 -- 0.313 -0.152 10.6 48 4204 -- --
37.96 0.287 7.96 -0.377 0.892 -0.813 -- -- -0.15 10.6 48 5227 -- --
85.26 0.43 7.96 -0.21 -- -1.32 -- 1.43 -0.173 -- 48 3851 -- --
43.3 0.308 7.95 -0.605 0.922 -- 0.573 -- -0.109 10.6 -- -- -- --
44.63 0.313 7.95 -0.581 0.919 -- -- -- -0.107 10.7 -- -- -- --
85.94 0.432 7.99 -0.322 -- -1.01 -- -- -0.179 -- 49.75 5219 -- --
41.03 0.298 7.96 -- 0.879 -1 -- -- -0.141 10.7 49.3 5239 -- --
96.65 0.459 7.98 -0.598 -- -- -- -- -0.112 -- -- -- -- --
53.53 0.342 7.94 -- 0.923 -- -- -- -0.0423 10.7 -- -- -- --
88.24 0.437 7.99 -- -- -1.19 -- -- -0.162 -- 49.1 5222 -- --
106.09 0.481 7.96 -- -- -- -- -- -0.0454 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.73 humidity 50.0 720 > th dose independent rect. 11 5
2 36.98 humidity 50.0 720 > th dose independent rect. 12 19
4 37.10 humidity 50.0 720 > th dose independent rect. 19 21
5 37.10 temperature 10.0 270 > th dose dependent rect. 19 12
6 37.14 humidity 50.0 720 > th dose independent rect. 4 19
7 37.22 wind 9.0 720 < th dose dependent rect. 15 4
8 37.26 humidity 50.0 720 > th dose independent rect. 3 13
12 37.36 humidity 50.0 720 > th dose independent rect. 12 11
16 37.45 temperature 10.0 90 > th dose dependent rect. 4 12
18 37.49 humidity 50.0 4320 < th dose dependent rect. 14 4
34 37.50 temperature 20.0 270 > th dose independent rect. 3 12
37 37.52 humidity 50.0 720 > th dose independent rect. 11 13
47 37.66 wind 7.0 720 < th dose independent rect. 15 4
48 37.67 atmosphere 1015.0 720 < th dose independent rect. 2 14
51 37.68 humidity 50.0 4320 < th dose dependent sin 12 NA
56 37.76 temperature 15.0 720 > th dose independent rect. 4 3
68 37.90 humidity 50.0 4320 < th dose independent rect. 13 4
69 37.90 humidity 50.0 4320 < th dose independent rect. 12 6
89 37.93 humidity 50.0 4320 < th dose independent rect. 15 1
118 38.07 wind 5.0 720 < th dose independent rect. 16 2
130 38.14 humidity 50.0 4320 < th dose independent sin 17 NA
136 38.15 wind 1.0 14400 < th dose dependent rect. 8 3
137 38.15 wind 1.0 14400 < th dose dependent rect. 8 5
142 38.17 wind 7.0 720 < th dose independent rect. 23 20
184 38.22 radiation 10.0 4320 < th dose independent rect. 11 1
187 38.23 atmosphere 995.0 720 > th dose independent rect. 16 11
192 38.24 atmosphere 995.0 720 > th dose independent rect. 16 19
195 38.25 radiation 30.0 720 < th dose independent rect. 15 4
202 38.27 wind 1.0 14400 < th dose dependent rect. 12 1
205 38.29 humidity 50.0 4320 < th dose independent no NA NA
370 38.35 humidity 60.0 720 > th dose independent rect. 18 14
372 38.37 wind 9.0 720 < th dose independent rect. 16 10
373 38.38 wind 9.0 720 < th dose independent rect. 14 14
375 38.39 humidity 60.0 720 > th dose independent rect. 18 6
376 38.39 temperature 10.0 720 > th dose dependent rect. 20 4
377 38.40 radiation 10.0 4320 > th dose independent rect. 11 1
378 38.40 atmosphere 1000.0 270 > th dose independent rect. 23 12
379 38.40 temperature 30.0 720 < th dose dependent rect. 23 4
380 38.41 atmosphere 995.0 720 > th dose independent rect. 16 3
381 38.41 wind 1.0 270 > th dose independent rect. 7 12
384 38.42 atmosphere 1015.0 4320 > th dose independent rect. 12 1
386 38.42 atmosphere 1015.0 4320 < th dose independent rect. 13 1
391 38.43 atmosphere 1000.0 720 > th dose independent rect. 23 5
393 38.43 atmosphere 995.0 720 > th dose independent rect. 15 13
394 38.43 humidity 50.0 4320 < th dose independent rect. 15 23
395 38.43 temperature 10.0 720 > th dose dependent rect. 21 2
396 38.43 radiation 10.0 4320 < th dose dependent rect. 11 3
409 38.45 atmosphere 1015.0 4320 > th dose dependent rect. 12 1
411 38.46 temperature 20.0 90 > th dose independent rect. 9 12
414 38.46 radiation 10.0 4320 < th dose dependent rect. 13 1
444 38.48 precipitation 0.1 720 < th dose independent rect. 23 5
446 38.48 precipitation 0.1 720 < th dose dependent rect. 23 5
448 38.49 wind 1.0 720 > th dose independent rect. 21 1
449 38.49 humidity 60.0 4320 > th dose independent rect. 10 1
466 38.52 wind 9.0 14400 > th dose dependent rect. 12 1
471 38.53 radiation 1.0 720 > th dose independent rect. 7 4
474 38.53 temperature 10.0 720 > th dose independent rect. 16 10
475 38.53 radiation 40.0 720 < th dose independent rect. 16 10
481 38.54 wind 9.0 720 < th dose independent rect. 4 10
483 38.54 atmosphere 995.0 720 > th dose independent rect. 4 10
484 38.54 atmosphere 1015.0 720 < th dose independent rect. 4 10
485 38.54 temperature 10.0 720 > th dose independent rect. 14 14
490 38.55 atmosphere 1015.0 4320 > th dose dependent rect. 4 1
494 38.56 wind 1.0 14400 < th dose independent rect. 8 3
497 38.56 temperature 30.0 270 < th dose independent rect. 23 12
498 38.56 atmosphere 995.0 270 > th dose independent rect. 7 12
510 38.58 wind 9.0 14400 < th dose independent rect. 9 5
513 38.58 atmosphere 1015.0 4320 > th dose dependent rect. 3 8
523 38.60 radiation 20.0 4320 < th dose dependent rect. 11 1
529 38.61 temperature 15.0 720 > th dose independent rect. 19 20
530 38.61 temperature 15.0 720 > th dose independent rect. 23 20
532 38.61 humidity 50.0 720 < th dose dependent rect. 15 3
555 38.62 radiation 40.0 43200 < th dose independent rect. 11 2
556 38.62 wind 1.0 720 > th dose independent rect. 19 4
565 38.62 atmosphere 1015.0 4320 > th dose dependent rect. 8 1
570 38.63 humidity 60.0 4320 < th dose independent rect. 10 1
581 38.64 wind 9.0 14400 < th dose independent rect. 4 10
591 38.65 atmosphere 1015.0 4320 > th dose independent rect. 9 2
592 38.65 atmosphere 1015.0 4320 < th dose independent rect. 9 2
593 38.65 atmosphere 1015.0 4320 < th dose independent rect. 8 4
594 38.65 wind 1.0 14400 < th dose independent rect. 8 5
600 38.65 wind 9.0 14400 < th dose independent rect. 2 12
602 38.65 temperature 20.0 4320 < th dose dependent rect. 5 1
625 38.66 precipitation 0.1 270 < th dose independent rect. 23 12
627 38.66 humidity 50.0 4320 > th dose independent rect. 12 21
628 38.66 temperature 10.0 720 > th dose dependent rect. 4 2
633 38.66 precipitation 0.1 270 < th dose dependent rect. 23 12
641 38.67 humidity 50.0 4320 > th dose independent rect. 12 6
643 38.67 atmosphere 1015.0 4320 < th dose independent rect. 5 7
644 38.67 atmosphere 1015.0 4320 > th dose independent rect. 4 8
648 38.67 humidity 50.0 4320 > th dose independent rect. 12 13
652 38.67 humidity 50.0 4320 > th dose independent rect. 12 19
663 38.68 radiation 40.0 43200 > th dose independent rect. 11 2
667 38.68 precipitation 0.1 720 < th dose independent rect. 11 5
678 38.68 precipitation 0.1 720 < th dose dependent rect. 11 5
730 38.71 wind 9.0 720 < th dose independent rect. 23 5
731 38.71 temperature 10.0 720 > th dose independent rect. 11 5
735 38.71 atmosphere 1015.0 720 < th dose independent rect. 11 5
744 38.71 temperature 10.0 720 > th dose independent rect. 16 19
758 38.72 temperature 10.0 720 > th dose independent rect. 23 5
759 38.72 temperature 30.0 720 < th dose independent rect. 23 5
760 38.72 humidity 50.0 720 > th dose independent rect. 23 5
765 38.72 radiation 1.0 720 < th dose independent rect. 23 5
777 38.72 wind 9.0 720 < th dose independent rect. 16 19
778 38.72 temperature 10.0 720 > th dose independent rect. 4 19
782 38.72 radiation 1.0 720 < th dose dependent rect. 23 5
802 38.73 precipitation 0.1 720 < th dose independent rect. 16 3
815 38.73 humidity 50.0 270 > th dose independent rect. 23 12
823 38.73 humidity 50.0 720 > th dose dependent rect. 4 3
824 38.73 precipitation 0.1 720 < th dose dependent rect. 16 3
830 38.74 humidity 50.0 4320 > th dose independent rect. 12 1
841 38.74 humidity 60.0 270 > th dose independent rect. 19 12
855 38.75 atmosphere 1015.0 4320 < th dose independent rect. 19 1
857 38.75 humidity 80.0 720 > th dose independent rect. 4 2
859 38.75 temperature 10.0 720 > th dose independent rect. 16 3
861 38.75 atmosphere 1015.0 720 < th dose independent rect. 16 3
868 38.75 temperature 10.0 270 > th dose independent rect. 7 12
869 38.75 temperature 10.0 270 > th dose independent rect. 19 12
870 38.75 temperature 30.0 270 < th dose independent rect. 19 12
873 38.75 atmosphere 995.0 270 > th dose independent rect. 19 12
874 38.75 atmosphere 1015.0 270 < th dose independent rect. 7 12
875 38.75 radiation 40.0 270 < th dose independent rect. 19 12
888 38.76 wind 9.0 720 < th dose independent rect. 4 3
890 38.76 temperature 30.0 720 < th dose independent rect. 4 3
891 38.76 humidity 50.0 720 > th dose independent rect. 4 3
893 38.76 atmosphere 995.0 720 > th dose independent rect. 4 3
895 38.76 atmosphere 1015.0 720 < th dose independent rect. 4 3
897 38.76 radiation 40.0 720 < th dose independent rect. 4 3
913 38.76 temperature 15.0 720 > th dose independent rect. 11 20
914 38.76 temperature 10.0 720 > th dose independent rect. 7 21
918 38.77 atmosphere 1015.0 4320 < th dose independent sin 2 NA
920 38.77 wind 9.0 14400 > th dose independent rect. 10 2
936 38.77 wind 9.0 270 < th dose independent rect. 19 12
953 38.78 wind 9.0 14400 < th dose independent sin 3 NA
971 38.78 temperature 10.0 270 > th dose independent rect. 11 12
972 38.78 temperature 10.0 270 > th dose independent rect. 23 12
986 38.79 atmosphere 1015.0 4320 > th dose independent sin 2 NA