BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0484400 Os11g0484400|J033142B11
         (77 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16370.1  | chr2:7082038-7084333 REVERSE LENGTH=520             89   6e-19
AT4G34570.1  | chr4:16511129-16514110 REVERSE LENGTH=566           87   1e-18
AT2G21550.1  | chr2:9227209-9230189 FORWARD LENGTH=493             69   4e-13

>AT2G16370.1 | chr2:7082038-7084333 REVERSE LENGTH=520
          Length = 519

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query: 18  FFQFYVESGELSCQMYQRSADMGLGVPFNIASYSLLTYMIAHVCGML 64
           F QFYV  GELSCQMYQRSADMGLGVPFNIASYSLLT M+AHVC ++
Sbjct: 404 FAQFYVAEGELSCQMYQRSADMGLGVPFNIASYSLLTCMLAHVCDLV 450



>AT4G34570.1 | chr4:16511129-16514110 REVERSE LENGTH=566
          Length = 565

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 18  FFQFYVESGELSCQMYQRSADMGLGVPFNIASYSLLTYMIAHVCGML 64
           F QFYV +GELSCQMYQRSADMGLGVPFNIASYSLLT ++AHVC ++
Sbjct: 450 FAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTCILAHVCDLV 496



>AT2G21550.1 | chr2:9227209-9230189 FORWARD LENGTH=493
          Length = 492

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 38/46 (82%)

Query: 18  FFQFYVESGELSCQMYQRSADMGLGVPFNIASYSLLTYMIAHVCGM 63
           F QFYV +GE+SCQ+YQ S +  +G+PF+IA+YSLLT +IAHVC +
Sbjct: 389 FTQFYVANGEVSCQIYQSSTEASIGIPFSIATYSLLTCIIAHVCDL 434



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.334    0.145    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,568,040
Number of extensions: 48742
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 3
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 104 (44.7 bits)