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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0439600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nod factor binding lectin-nucleotide phosphohydrolase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0478) R2 : 0.913
β1 : -5.11 (0.194) R2dD : 0.18 R2D : -0.416
β2 : 0.622 (0.117) R2dC : 0.00555 R2C : -0.329
β3 : -3.77 (0.21) R2dE : 0.0906 R2E : -0.554
β4 : 2.4 (0.489) R2dD*C : 0.00461 R2D*C : -0.32
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -7.47 (0.112) R2dN8 : 1.46 R2N8 : 0.734
σ : 0.866
deviance : 346
__
_____
C
peak time of C : 8.44
E
wheather : temperature
threshold : 27.73
memory length : 3355
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.4 0.864 10 -5.05 0.478 -4.46 2.46 -2.8 -7.46 8.39 24.05 4514 -- --
346 0.866 10.1 -5.11 0.622 -3.77 2.4 -- -7.47 8.44 27.73 3355 -- --
357.05 0.88 10 -4.97 0.472 -4.53 -- -3.07 -7.46 7.79 23.86 4512 -- --
363.95 0.889 10.1 -5.03 0.607 -3.73 -- -- -7.46 8.05 27.74 3313 -- --
369.73 0.896 10 -4.93 -- -4.42 -- -2.89 -7.45 -- 24.08 4451 -- --
586.75 1.14 9.88 -3.44 0.511 -- 2.33 -- -6.54 8.12 -- -- -- --
602.22 1.15 9.89 -3.38 0.536 -- -- -- -6.54 7.19 -- -- -- --
374.63 0.901 10.1 -5.31 -- -3.88 -- -- -7.5 -- 25.79 4433 -- --
855.11 1.36 9.85 -- 0.525 -1.6 -- -- -6.39 8.88 56.2 1243 -- --
617.42 1.16 9.9 -3.37 -- -- -- -- -6.53 -- -- -- -- --
903.51 1.41 9.8 -- 0.505 -- -- -- -6.16 7.62 -- -- -- --
868.53 1.37 9.87 -- -- -1.56 -- -- -6.39 -- 67.41 1433 -- --
917.21 1.41 9.81 -- -- -- -- -- -6.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.67 radiation 40.0 43200 < th dose dependent rect. 18 2
5 315.63 radiation 40.0 43200 < th dose dependent rect. 18 4
17 316.43 radiation 30.0 43200 < th dose dependent rect. 18 6
25 317.24 radiation 10.0 43200 < th dose dependent rect. 18 9
45 322.88 precipitation 0.1 43200 < th dose independent rect. 20 1
46 322.88 precipitation 0.1 43200 < th dose dependent rect. 20 1
47 322.94 precipitation 0.1 43200 > th dose independent rect. 20 1
48 324.62 precipitation 0.1 43200 > th dose independent rect. 17 5
49 324.65 precipitation 0.1 43200 < th dose independent rect. 17 5
50 324.65 precipitation 0.1 43200 < th dose dependent rect. 17 5
57 326.25 radiation 10.0 14400 > th dose dependent rect. 17 14
58 327.11 humidity 80.0 43200 > th dose independent rect. 17 1
62 328.71 precipitation 0.1 43200 > th dose dependent rect. 17 6
63 328.84 temperature 25.0 4320 < th dose dependent rect. 5 2
66 329.06 precipitation 0.1 43200 > th dose dependent rect. 20 5
67 329.08 temperature 25.0 4320 < th dose dependent rect. 24 7
68 329.09 temperature 10.0 4320 > th dose dependent rect. 5 1
72 329.31 radiation 10.0 14400 < th dose independent rect. 17 14
76 329.35 precipitation 0.1 43200 > th dose dependent rect. 13 10
82 329.45 temperature 25.0 4320 < th dose dependent rect. 2 1
91 329.99 precipitation 0.1 43200 > th dose independent rect. 14 9
92 329.99 precipitation 0.1 43200 < th dose independent rect. 14 9
94 329.99 precipitation 0.1 43200 < th dose dependent rect. 14 9
95 330.00 temperature 10.0 4320 > th dose dependent rect. 24 7
96 330.09 precipitation 0.1 43200 > th dose dependent rect. 17 9
139 330.76 temperature 10.0 4320 > th dose dependent rect. 2 1
141 330.76 precipitation 0.1 43200 > th dose dependent rect. 13 6
142 330.77 temperature 10.0 4320 > th dose dependent rect. 24 3
186 331.41 radiation 10.0 14400 < th dose independent rect. 17 1
226 332.00 precipitation 0.1 43200 > th dose independent rect. 17 2
240 332.16 humidity 80.0 43200 < th dose independent rect. 16 3
244 332.25 precipitation 0.1 43200 < th dose independent rect. 17 2
245 332.25 precipitation 0.1 43200 < th dose dependent rect. 17 2
269 332.72 radiation 10.0 14400 < th dose independent rect. 17 3
278 332.84 radiation 1.0 14400 > th dose dependent rect. 18 12
295 332.96 radiation 10.0 14400 < th dose independent rect. 17 7
308 333.12 radiation 10.0 14400 < th dose independent rect. 17 10
310 333.14 humidity 80.0 43200 < th dose dependent rect. 17 1
351 333.76 radiation 10.0 14400 > th dose dependent rect. 6 1
368 333.84 temperature 25.0 4320 < th dose dependent rect. 15 16
375 333.94 radiation 1.0 14400 < th dose independent rect. 15 5
377 333.97 radiation 1.0 14400 < th dose independent rect. 15 7
382 334.00 radiation 1.0 14400 < th dose independent rect. 15 9
389 334.03 radiation 1.0 14400 < th dose independent rect. 15 12
420 334.35 temperature 25.0 4320 < th dose dependent sin 9 NA
423 334.38 precipitation 0.1 43200 > th dose dependent rect. 15 4
454 334.76 humidity 60.0 43200 > th dose independent rect. 14 6
468 334.93 precipitation 0.1 43200 > th dose dependent sin 18 NA
551 335.79 radiation 1.0 14400 < th dose independent rect. 8 10
560 335.92 temperature 25.0 4320 < th dose dependent rect. 23 15
561 335.97 radiation 1.0 14400 < th dose independent rect. 8 21
567 336.05 humidity 60.0 43200 < th dose independent rect. 15 4
588 336.25 radiation 1.0 14400 < th dose independent rect. 8 12
599 336.28 radiation 1.0 14400 < th dose independent rect. 8 14
606 336.31 radiation 1.0 14400 < th dose independent rect. 8 16
608 336.33 radiation 1.0 14400 < th dose independent rect. 8 19
623 336.47 humidity 60.0 43200 > th dose independent rect. 17 1
633 336.54 humidity 80.0 43200 > th dose dependent rect. 18 2
656 336.74 humidity 60.0 43200 > th dose independent rect. 15 1
712 337.33 radiation 1.0 14400 > th dose independent rect. 15 4
753 337.75 radiation 1.0 14400 < th dose independent sin 17 NA
768 337.83 radiation 1.0 14400 > th dose independent rect. 8 10
840 338.33 radiation 1.0 43200 > th dose independent rect. 17 12
845 338.36 temperature 10.0 4320 > th dose dependent sin 10 NA
888 338.66 radiation 1.0 14400 > th dose independent rect. 8 21
905 338.81 radiation 40.0 14400 < th dose independent rect. 15 18
957 339.03 atmosphere 1010.0 14400 > th dose independent rect. 15 1
973 339.14 precipitation 0.1 43200 > th dose independent rect. 23 1
974 339.14 precipitation 0.1 43200 > th dose dependent rect. 23 1