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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0425100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C1A, papain family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.59 (0.139) R2 : 0.0674
β1 : 3.86 (0.759) R2dD : 0.929 R2D : -1.11
β2 : -- (--) R2dC : -- R2C : --
β3 : -24.6 (4.91) R2dE : 10.1 R2E : -10.3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 144 (29) R2dD*E : 10.3 R2D*E : -10.1
γ1 : -0.26 (0.109) R2dN8 : 0.0159 R2N8 : -0.407
σ : 0.951
deviance : 416.86
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.2
memory length : 71
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
412.11 0.954 2.65 3.53 0.108 -20.9 1 122 -0.263 12.7 999.5 82 -- --
432.43 0.976 3.23 0.207 0.136 -0.268 1.09 -- -0.273 12.8 999.5 82 -- --
416.05 0.95 2.65 3.52 0.13 -21.2 -- 123 -0.261 15 999.4 82 -- --
434.11 0.977 3.23 0.263 0.156 -0.886 -- -- -0.272 14.7 997.5 381 -- --
416.86 0.951 2.59 3.86 -- -24.6 -- 144 -0.26 -- 999.2 71 -- --
432.99 0.976 3.23 0.188 0.135 -- 1.08 -- -0.265 12.8 -- -- -- --
437.76 0.98 3.23 0.229 0.149 -- -- -- -0.258 14.5 -- -- -- --
435.53 0.976 3.23 0.256 -- -0.872 -- -- -0.276 -- 997.5 381 -- --
435.93 0.978 3.24 -- 0.15 -0.829 -- -- -0.3 14.7 997.5 381 -- --
439.06 0.979 3.23 0.223 -- -- -- -- -0.262 -- -- -- -- --
439.15 0.98 3.23 -- 0.144 -- -- -- -0.284 14.5 -- -- -- --
437.24 0.977 3.24 -- -- -0.817 -- -- -0.303 -- 997.5 381 -- --
440.37 0.979 3.23 -- -- -- -- -- -0.287 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 407.36 atmosphere 1000 90 < th dose dependent rect. 9 13
8 407.59 atmosphere 1000 30 < th dose dependent rect. 7 15
10 407.64 atmosphere 1000 30 < th dose dependent sin 21 NA
43 407.98 atmosphere 1000 270 < th dose dependent rect. 8 6
140 408.82 wind 7 1440 < th dose independent sin 10 NA
146 408.95 wind 7 1440 > th dose independent sin 10 NA
152 408.98 atmosphere 1000 270 < th dose dependent rect. 11 2
168 409.38 wind 5 1440 > th dose dependent rect. 19 15
172 409.48 wind 7 1440 > th dose independent rect. 18 16
178 409.66 wind 5 1440 < th dose independent rect. 20 1
187 409.89 atmosphere 1000 30 < th dose dependent rect. 1 21
191 409.95 atmosphere 1000 30 < th dose dependent rect. 3 19
197 410.04 wind 7 1440 < th dose independent rect. 19 15
201 410.10 wind 5 1440 > th dose independent rect. 20 1
215 410.29 atmosphere 1000 270 < th dose independent rect. 8 7
234 410.44 wind 5 1440 > th dose dependent rect. 19 3
265 410.61 humidity 90 4320 > th dose independent rect. 8 1
294 410.81 wind 5 1440 > th dose dependent rect. 19 6
299 410.86 atmosphere 1005 14400 < th dose independent rect. 23 1
300 410.86 atmosphere 1000 90 < th dose dependent rect. 6 22
334 411.09 atmosphere 1000 90 < th dose dependent rect. 9 19
365 411.30 wind 7 1440 < th dose independent rect. 19 6
409 411.55 humidity 90 4320 > th dose independent rect. 8 6
410 411.56 wind 7 1440 < th dose independent rect. 18 10
422 411.62 humidity 70 720 > th dose dependent rect. 8 4
430 411.66 humidity 90 4320 > th dose independent rect. 8 3
433 411.68 humidity 70 4320 > th dose dependent rect. 10 1
474 411.87 atmosphere 1005 43200 > th dose independent rect. 4 1
487 411.91 wind 7 1440 > th dose independent rect. 18 7
496 411.95 wind 5 1440 > th dose dependent sin 10 NA
510 412.04 humidity 70 4320 > th dose dependent rect. 9 3
526 412.10 atmosphere 1005 43200 < th dose independent rect. 3 2
532 412.12 wind 5 1440 > th dose dependent rect. 19 11
579 412.37 humidity 80 4320 < th dose independent rect. 9 3
591 412.41 humidity 80 720 > th dose independent rect. 22 14
594 412.42 humidity 70 720 > th dose independent rect. 9 3
612 412.50 atmosphere 1005 14400 > th dose independent rect. 23 1
629 412.60 atmosphere 1005 43200 < th dose independent rect. 11 1
631 412.62 humidity 90 4320 < th dose independent rect. 8 1
635 412.64 atmosphere 1005 43200 < th dose independent rect. 22 7
657 412.74 atmosphere 1005 14400 < th dose independent rect. 1 1
658 412.74 atmosphere 1000 720 < th dose dependent rect. 4 4
669 412.81 atmosphere 1005 43200 > th dose independent rect. 22 7
671 412.81 atmosphere 1000 270 < th dose independent rect. 7 12
695 412.90 atmosphere 1000 720 < th dose independent rect. 4 4
698 412.91 atmosphere 1000 720 < th dose independent rect. 5 2
715 412.98 atmosphere 1000 270 < th dose independent sin 0 NA
732 413.03 humidity 90 4320 > th dose dependent rect. 8 6
745 413.06 atmosphere 1000 720 < th dose independent rect. 4 8
776 413.16 atmosphere 1000 30 < th dose independent rect. 12 10
794 413.22 atmosphere 1000 270 > th dose independent sin 0 NA
820 413.29 atmosphere 1005 43200 > th dose independent rect. 11 1
834 413.32 atmosphere 1000 90 < th dose dependent rect. 9 23
842 413.35 atmosphere 1000 270 < th dose independent rect. 12 1
857 413.38 humidity 70 4320 < th dose independent rect. 11 1
862 413.39 atmosphere 1000 90 < th dose dependent rect. 17 23
863 413.39 atmosphere 1000 90 < th dose dependent rect. 19 23
883 413.46 atmosphere 1000 90 < th dose dependent no NA NA
885 413.47 humidity 60 720 > th dose dependent rect. 23 13
887 413.47 atmosphere 1000 90 < th dose dependent rect. 21 23
920 413.51 atmosphere 1000 90 < th dose dependent rect. 3 23
933 413.55 atmosphere 1000 720 < th dose independent rect. 7 1
934 413.55 atmosphere 1000 720 < th dose dependent rect. 7 1
994 413.64 atmosphere 1000 30 < th dose dependent rect. 13 23