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Os11g0310800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATP-dependent helicase, DEAH-box family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.57 (0.0153) R2 : 0.529
β1 : -0.876 (0.0561) R2dD : 0.261 R2D : 0.286
β2 : 0.58 (0.039) R2dC : 0.231 R2C : 0.225
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.121 (0.0327) R2dN8 : 0.0189 R2N8 : 0.035
σ : 0.288
deviance : 37.86
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_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.29 0.271 9.58 -0.8 0.693 -0.476 -0.0375 0.244 0.0865 19.6 30.38 274 -- --
33.29 0.269 9.58 -0.819 0.692 -0.449 -0.034 -- 0.0864 19.6 30.3 273 -- --
33.29 0.269 9.58 -0.797 0.692 -0.48 -- 0.261 0.0862 19.6 30.38 276 -- --
33.3 0.269 9.58 -0.818 0.693 -0.452 -- -- 0.0861 19.6 30.31 273 -- --
55.42 0.349 9.56 -0.866 -- -0.172 -- 0.00398 0.0996 -- 30.38 276 -- --
37.66 0.288 9.57 -0.883 0.58 -- -0.261 -- 0.121 20 -- -- -- --
37.86 0.288 9.57 -0.876 0.58 -- -- -- 0.121 20 -- -- -- --
54.69 0.344 9.56 -0.833 -- -0.2 -- -- 0.0676 -- 30.33 1575 -- --
50.56 0.331 9.56 -- 0.731 -0.551 -- -- 0.173 19.4 30.3 300 -- --
56.26 0.35 9.55 -0.882 -- -- -- -- 0.113 -- -- -- -- --
58.09 0.357 9.55 -- 0.586 -- -- -- 0.218 19.9 -- -- -- --
59.6 0.36 9.48 -- -- -0.603 -- -- 0.448 -- 26.15 47520 -- --
76.77 0.409 9.53 -- -- -- -- -- 0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.52 temperature 25.0 10 > th dose independent rect. 24 9
2 30.78 temperature 25.0 10 > th dose independent rect. 4 5
16 31.94 humidity 60.0 270 > th dose independent rect. 6 22
20 32.07 temperature 30.0 270 < th dose independent rect. 6 22
22 32.12 temperature 30.0 270 < th dose independent rect. 7 12
23 32.17 humidity 90.0 10 < th dose independent rect. 4 5
24 32.19 humidity 60.0 270 > th dose independent rect. 7 12
42 32.60 precipitation 0.1 14400 < th dose independent rect. 6 3
45 32.60 precipitation 0.1 14400 < th dose dependent rect. 6 3
53 32.67 humidity 70.0 270 < th dose dependent rect. 11 6
62 32.73 temperature 25.0 10 > th dose dependent rect. 15 18
70 32.76 temperature 20.0 10 > th dose dependent rect. 24 9
71 32.77 temperature 30.0 720 < th dose independent rect. 7 4
82 32.83 temperature 25.0 10 > th dose independent rect. 15 18
90 32.88 humidity 70.0 270 < th dose dependent rect. 11 9
108 32.91 humidity 60.0 270 < th dose independent rect. 11 6
112 32.92 temperature 30.0 720 < th dose independent rect. 1 9
116 32.93 temperature 30.0 720 < th dose independent rect. 7 6
127 32.96 precipitation 0.1 14400 > th dose independent rect. 6 3
130 32.96 precipitation 0.1 14400 > th dose dependent rect. 6 3
135 32.99 temperature 30.0 270 > th dose independent rect. 11 6
144 33.03 humidity 80.0 10 < th dose dependent rect. 15 18
145 33.04 temperature 30.0 270 < th dose independent sin 19 NA
208 33.12 humidity 60.0 30 > th dose independent rect. 9 21
210 33.12 temperature 30.0 270 < th dose independent rect. 14 23
220 33.16 humidity 60.0 720 > th dose independent rect. 7 6
223 33.16 wind 3.0 1440 < th dose dependent rect. 2 1
225 33.17 temperature 30.0 720 < th dose independent rect. 9 1
228 33.17 temperature 20.0 30 > th dose independent rect. 9 6
230 33.17 humidity 60.0 270 > th dose independent rect. 16 23
231 33.18 atmosphere 1010.0 30 < th dose independent rect. 9 6
250 33.19 humidity 60.0 270 > th dose independent sin 21 NA
264 33.19 radiation 1.0 30 > th dose dependent rect. 15 18
269 33.20 temperature 30.0 270 > th dose independent sin 20 NA
294 33.24 temperature 30.0 270 < th dose independent rect. 15 12
302 33.26 temperature 30.0 270 > th dose independent rect. 15 1
305 33.26 temperature 20.0 10 > th dose dependent rect. 2 7
320 33.30 precipitation 0.1 14400 < th dose independent rect. 4 8
324 33.30 atmosphere 1005.0 270 > th dose dependent rect. 4 1
326 33.30 precipitation 0.1 14400 < th dose dependent rect. 4 8
327 33.30 atmosphere 1005.0 10 > th dose dependent rect. 24 9
328 33.31 humidity 60.0 270 > th dose independent sin 18 NA
336 33.31 humidity 70.0 270 < th dose dependent sin 20 NA
341 33.32 precipitation 0.1 14400 > th dose independent rect. 4 8
375 33.35 humidity 60.0 270 < th dose independent sin 21 NA
376 33.35 temperature 30.0 270 > th dose independent rect. 13 3
427 33.39 precipitation 0.1 14400 > th dose dependent rect. 4 9
433 33.40 temperature 30.0 270 > th dose independent rect. 18 23
434 33.40 temperature 30.0 270 < th dose independent rect. 24 23
435 33.40 humidity 60.0 270 > th dose independent rect. 14 23
442 33.42 temperature 30.0 270 > th dose independent no NA NA
444 33.42 humidity 90.0 30 < th dose independent rect. 9 6
541 33.43 temperature 30.0 720 < th dose independent rect. 23 14
543 33.43 temperature 30.0 270 < th dose independent rect. 20 23
546 33.44 temperature 30.0 270 < th dose independent no NA NA
554 33.44 temperature 30.0 270 < th dose independent rect. 16 23
559 33.45 humidity 70.0 90 < th dose independent rect. 15 17
565 33.46 radiation 20.0 4320 > th dose independent rect. 6 2
603 33.47 temperature 30.0 270 < th dose independent rect. 22 23
605 33.47 atmosphere 1005.0 30 > th dose dependent rect. 2 7
612 33.48 temperature 25.0 4320 > th dose dependent rect. 24 1
677 33.52 humidity 60.0 270 > th dose independent no NA NA
679 33.52 temperature 20.0 30 > th dose dependent rect. 4 5
687 33.53 radiation 1.0 30 > th dose independent rect. 15 18
690 33.53 humidity 80.0 10 < th dose dependent rect. 15 6
708 33.56 humidity 60.0 270 > th dose independent rect. 16 11
719 33.57 atmosphere 1005.0 30 > th dose dependent rect. 4 5
745 33.59 temperature 25.0 4320 > th dose independent rect. 23 5
748 33.59 humidity 60.0 270 < th dose independent rect. 18 23
750 33.59 atmosphere 1005.0 270 > th dose dependent rect. 24 6
777 33.62 humidity 60.0 270 < th dose independent no NA NA
778 33.62 temperature 25.0 4320 < th dose independent rect. 23 5
872 33.62 temperature 30.0 270 > th dose dependent rect. 10 7
881 33.63 temperature 30.0 270 > th dose dependent rect. 18 23
905 33.64 temperature 30.0 270 > th dose dependent rect. 10 9
930 33.65 temperature 30.0 270 > th dose dependent sin 23 NA
961 33.67 humidity 50.0 14400 > th dose independent rect. 19 10