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Os11g0296800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chromatin SPT2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0114) R2 : 0.109
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.179 (0.024) R2dN8 : 0.14 R2N8 : 0.109
σ : 0.214
deviance : 21.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.81 0.147 12.5 0.673 0.0107 0.416 0.17 0.146 0.285 17.6 1015 4873 -- --
9.83 0.146 12.5 0.681 0.00942 0.375 0.177 -- 0.287 17.6 1015 4833 -- --
9.87 0.146 12.5 0.673 0.0148 0.429 -- 0.191 0.284 16.5 1015 4880 -- --
9.91 0.147 12.5 0.679 0.0114 0.364 -- -- 0.287 16.8 1015 4868 -- --
9.88 0.146 12.5 0.67 -- 0.464 -- 0.265 0.282 -- 1016 4880 -- --
11.77 0.161 12.5 0.594 0.0185 -- 0.112 -- 0.244 17.6 -- -- -- --
11.8 0.161 12.5 0.593 0.0194 -- -- -- 0.245 17 -- -- -- --
9.91 0.147 12.5 0.678 -- 0.364 -- -- 0.287 -- 1015 4866 -- --
20.79 0.212 12.5 -- 0.00296 0.213 -- -- 0.187 16.3 1016 3736 -- --
11.82 0.161 12.5 0.592 -- -- -- -- 0.244 -- -- -- -- --
21.07 0.215 12.5 -- 0.0102 -- -- -- 0.179 19 -- -- -- --
17.38 0.194 12.6 -- -- -0.332 -- -- 0.111 -- 1015 47520 -- --
21.08 0.214 12.5 -- -- -- -- -- 0.179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.68 temperature 10 720 > th dose dependent rect. 10 10
15 9.75 wind 9 4320 < th dose independent rect. 7 3
18 9.77 temperature 30 720 < th dose dependent sin 22 NA
22 9.78 temperature 15 270 > th dose dependent rect. 9 18
24 9.79 temperature 30 720 < th dose dependent rect. 11 6
30 9.80 temperature 10 720 > th dose dependent sin 22 NA
34 9.80 temperature 30 720 < th dose dependent rect. 10 9
36 9.80 temperature 30 720 < th dose dependent rect. 7 12
40 9.81 wind 9 43200 < th dose independent rect. 20 1
63 9.82 temperature 10 720 > th dose dependent rect. 3 18
66 9.83 temperature 10 1440 > th dose dependent rect. 13 1
67 9.83 temperature 30 720 < th dose dependent rect. 13 4
90 9.86 wind 9 43200 > th dose independent rect. 20 1
91 9.86 temperature 10 1440 > th dose dependent rect. 11 3
95 9.86 wind 9 43200 > th dose dependent rect. 17 6
96 9.86 temperature 15 720 > th dose dependent rect. 9 6
101 9.86 atmosphere 1015 4320 > th dose dependent rect. 9 15
126 9.88 atmosphere 1015 4320 > th dose dependent sin 19 NA
128 9.88 temperature 30 1440 < th dose dependent rect. 13 1
130 9.88 wind 9 43200 > th dose dependent rect. 20 3
133 9.88 wind 9 43200 > th dose dependent rect. 17 4
180 9.90 humidity 90 720 < th dose independent rect. 9 11
247 9.92 temperature 20 10 > th dose dependent rect. 12 17
257 9.93 atmosphere 995 43200 < th dose independent rect. 16 6
281 9.94 temperature 30 720 < th dose dependent rect. 15 1
289 9.94 atmosphere 995 43200 < th dose dependent rect. 16 6
293 9.94 wind 9 43200 > th dose dependent rect. 17 11
312 9.95 atmosphere 1015 4320 > th dose independent rect. 11 10
313 9.95 atmosphere 1015 4320 < th dose independent rect. 11 10
320 9.95 atmosphere 1000 43200 < th dose dependent rect. 4 1
351 9.96 atmosphere 995 43200 > th dose independent rect. 16 6
352 9.96 atmosphere 1015 4320 < th dose independent rect. 13 8
361 9.96 humidity 70 14400 < th dose dependent rect. 19 1
369 9.96 radiation 1 43200 < th dose dependent rect. 23 3
406 9.97 wind 9 43200 < th dose independent rect. 19 3
408 9.97 atmosphere 1015 4320 > th dose independent rect. 13 8
457 9.98 atmosphere 1015 4320 < th dose independent rect. 16 5
511 9.99 atmosphere 1015 4320 > th dose independent sin 19 NA
513 9.99 atmosphere 1015 4320 < th dose independent sin 19 NA
515 9.99 atmosphere 1015 4320 > th dose independent rect. 16 5
530 9.99 atmosphere 1015 4320 > th dose dependent no NA NA
566 10.00 wind 7 43200 > th dose independent rect. 18 3
616 10.00 atmosphere 1015 4320 > th dose dependent rect. 15 23
662 10.01 atmosphere 1015 4320 > th dose dependent rect. 16 10
702 10.01 atmosphere 1015 4320 > th dose dependent rect. 22 23
706 10.02 humidity 60 14400 > th dose independent rect. 18 2
721 10.02 temperature 10 10 > th dose dependent sin 17 NA
734 10.02 atmosphere 1015 4320 > th dose dependent rect. 15 8
735 10.02 atmosphere 1015 4320 > th dose dependent rect. 17 8
783 10.03 atmosphere 1000 43200 < th dose independent rect. 3 1
785 10.03 humidity 60 14400 < th dose independent rect. 18 2
799 10.03 atmosphere 995 43200 < th dose independent rect. 15 8
811 10.03 wind 9 4320 > th dose dependent rect. 7 3
816 10.03 atmosphere 1015 4320 > th dose dependent rect. 18 5
820 10.03 atmosphere 1015 4320 > th dose dependent rect. 16 6
830 10.03 wind 9 43200 > th dose dependent rect. 20 8
873 10.04 atmosphere 1000 43200 > th dose independent rect. 3 1
886 10.04 atmosphere 995 43200 > th dose independent rect. 15 8
893 10.04 wind 9 43200 > th dose independent rect. 17 11
895 10.04 humidity 60 14400 > th dose independent rect. 18 12
910 10.04 atmosphere 1015 4320 > th dose dependent rect. 19 3
926 10.04 humidity 80 720 > th dose dependent rect. 10 8
967 10.05 temperature 15 4320 > th dose independent rect. 7 3