BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0296800 Os11g0296800|AK069908
         (668 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22720.2  | chr2:9657344-9660532 FORWARD LENGTH=673             97   3e-20
AT4G37860.1  | chr4:17800589-17801907 REVERSE LENGTH=355           77   3e-14

>AT2G22720.2 | chr2:9657344-9660532 FORWARD LENGTH=673
          Length = 672

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 81/139 (58%), Gaps = 4/139 (2%)

Query: 167 FLQIRERLKEQIRRKXXXXXXXXXXXXXXXHDRKPQSTFGSFFGPSKPVISQRVIEERKS 226
           FL+ R++LKE IR+K                 + P + FGSFFGPS+PVIS RVI+E KS
Sbjct: 145 FLESRQKLKESIRKKMGNGSANAQSSQERRR-KLPYNDFGSFFGPSRPVISSRVIQESKS 203

Query: 227 LKELQNTASMSRDRRPSAKEIPSSSKVQSKTNGHHHKQKIVNEAKRKAEALKDNRDYSFL 286
           L E      MS   +   + +P++    SK      + K+VNE +RK E LKD RDYSFL
Sbjct: 204 LLE-NELRKMSNSSQTKKRPVPTNGS-GSKNVSQEKRPKVVNEVRRKVETLKDTRDYSFL 261

Query: 287 LSDDADISPSPMEKPVARS 305
            SDDA++ P P ++ ++RS
Sbjct: 262 FSDDAEL-PVPKKESLSRS 279



>AT4G37860.1 | chr4:17800589-17801907 REVERSE LENGTH=355
          Length = 354

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 77/154 (50%), Gaps = 18/154 (11%)

Query: 167 FLQIRERLKEQIRRKXXXXXXXXX-XXXXXXHDRKPQ--STFGSFFGPSKPVISQRVIEE 223
           FL++R+R+KE IR K                H  K      FGSFFGPS+ VI+ RV++E
Sbjct: 5   FLELRQRIKESIRTKMQSGDTIIAPTSQTQLHQSKSNLPYDFGSFFGPSQTVIASRVLQE 64

Query: 224 RKSLKELQNTASMSRDRRPSAKEIPS-----------SSKVQSKTNGHHHKQKIVNEAKR 272
            K L E + +A+   +   +   I S           SS + +  +G     K  NE KR
Sbjct: 65  SKPLLENETSAAKMLNSIQNVCLIRSFFFTFLTLQKKSSVLMNDASG----TKNANEVKR 120

Query: 273 KAEALKDNRDYSFLLSDDADISPSPMEKPVARSS 306
           KAE LKD RDYSFL SDDA +  S  E P +R S
Sbjct: 121 KAEKLKDGRDYSFLFSDDAQLPVSIKEPPTSRPS 154



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,283,459
Number of extensions: 331982
Number of successful extensions: 1156
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1150
Number of HSP's successfully gapped: 2
Length of query: 668
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 563
Effective length of database: 8,227,889
Effective search space: 4632301507
Effective search space used: 4632301507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)