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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0295900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AP2/EREBP transcription factor BABY BOOM1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0171) R2 : 0.00858
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0716 (0.036) R2dN8 : 0.0111 R2N8 : 0.00858
σ : 0.322
deviance : 47.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.63 0.31 3.31 0.2 0.158 0.204 -0.000707 1.08 -0.0864 7.46 91 5898 -- --
45.31 0.314 3.3 0.14 0.178 0.238 -0.0284 -- -0.103 7.62 91 6609 -- --
43.63 0.308 3.31 0.2 0.158 0.204 -- 1.08 -0.0865 7.46 91 5899 -- --
45.31 0.313 3.3 0.14 0.175 0.238 -- -- -0.103 7.62 91 6650 -- --
44.96 0.312 3.31 0.201 -- 0.208 -- 1.09 -0.0837 -- 91 5868 -- --
46.03 0.318 3.29 0.111 0.157 -- -0.0192 -- -0.0616 7.34 -- -- -- --
46.03 0.318 3.29 0.111 0.156 -- -- -- -0.0615 7.39 -- -- -- --
46.58 0.318 3.31 0.141 -- 0.241 -- -- -0.108 -- 89 7155 -- --
45.77 0.315 3.3 -- 0.176 0.217 -- -- -0.113 7.53 88.54 6588 -- --
47.33 0.321 3.3 0.114 -- -- -- -- -0.0589 -- -- -- -- --
46.35 0.318 3.3 -- 0.158 -- -- -- -0.0739 7.34 -- -- -- --
47.09 0.32 3.31 -- -- 0.199 -- -- -0.11 -- 88.67 7163 -- --
47.67 0.322 3.3 -- -- -- -- -- -0.0716 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.07 humidity 80.0 14400 < th dose dependent rect. 3 6
9 41.60 humidity 70.0 14400 > th dose independent rect. 8 1
11 41.77 humidity 70.0 14400 < th dose independent rect. 8 1
12 41.81 humidity 70.0 14400 > th dose independent rect. 4 5
17 41.82 humidity 70.0 14400 > th dose independent rect. 22 11
39 42.16 wind 1.0 14400 < th dose dependent rect. 6 1
48 42.56 wind 1.0 14400 < th dose independent rect. 6 1
63 42.65 humidity 50.0 4320 > th dose independent rect. 14 1
64 42.65 humidity 90.0 30 < th dose dependent rect. 1 9
78 42.68 humidity 90.0 10 < th dose dependent rect. 5 5
90 42.78 humidity 90.0 10 < th dose dependent rect. 20 14
92 42.80 atmosphere 1005.0 10 > th dose dependent rect. 2 2
93 42.81 wind 5.0 14400 < th dose independent rect. 11 1
95 42.81 humidity 90.0 10 < th dose dependent rect. 22 12
96 42.82 atmosphere 1000.0 30 > th dose independent rect. 3 23
100 42.85 wind 3.0 14400 > th dose independent rect. 10 1
105 42.86 humidity 80.0 10 < th dose independent rect. 4 6
108 42.86 wind 1.0 14400 < th dose dependent rect. 4 4
120 42.91 humidity 80.0 10 < th dose independent rect. 24 10
124 42.93 radiation 1.0 30 > th dose dependent rect. 6 4
135 42.97 wind 1.0 14400 > th dose independent rect. 5 2
161 43.04 radiation 40.0 90 > th dose independent rect. 9 2
164 43.08 wind 1.0 14400 < th dose independent rect. 4 4
171 43.12 wind 5.0 14400 < th dose dependent rect. 10 2
187 43.13 radiation 10.0 30 > th dose independent rect. 6 4
206 43.15 wind 1.0 14400 > th dose independent rect. 4 4
208 43.15 humidity 60.0 14400 < th dose dependent rect. 12 1
292 43.25 radiation 40.0 90 > th dose independent sin 11 NA
310 43.25 wind 1.0 14400 < th dose dependent rect. 4 7
320 43.28 radiation 40.0 10 > th dose independent sin 11 NA
331 43.29 wind 3.0 14400 > th dose dependent rect. 11 1
337 43.30 wind 1.0 14400 < th dose dependent rect. 2 6
338 43.31 radiation 20.0 90 > th dose independent rect. 8 1
364 43.34 atmosphere 1000.0 10 > th dose independent rect. 10 22
372 43.35 wind 5.0 14400 < th dose independent rect. 10 5
377 43.35 atmosphere 1000.0 720 > th dose independent rect. 3 8
412 43.37 wind 7.0 720 < th dose independent rect. 16 14
417 43.37 radiation 1.0 43200 < th dose dependent rect. 3 1
433 43.40 humidity 90.0 720 > th dose independent rect. 3 1
466 43.42 temperature 30.0 720 < th dose dependent rect. 22 1
469 43.43 humidity 60.0 14400 < th dose independent rect. 10 2
471 43.43 radiation 40.0 10 > th dose independent rect. 14 20
508 43.44 wind 5.0 14400 > th dose independent rect. 10 5
524 43.44 humidity 80.0 720 > th dose dependent rect. 3 1
527 43.45 humidity 50.0 4320 < th dose independent rect. 14 1
549 43.45 humidity 50.0 14400 > th dose dependent rect. 8 1
571 43.47 wind 7.0 720 < th dose independent rect. 17 12
591 43.48 humidity 90.0 90 < th dose independent rect. 2 2
593 43.48 wind 1.0 14400 < th dose independent rect. 4 7
596 43.48 atmosphere 995.0 720 > th dose independent rect. 23 16
609 43.48 wind 1.0 14400 < th dose dependent rect. 2 9
697 43.51 precipitation 0.1 720 < th dose independent rect. 15 8
715 43.51 precipitation 0.1 720 < th dose dependent rect. 15 8
732 43.52 wind 1.0 14400 > th dose independent rect. 4 7
749 43.52 radiation 10.0 90 > th dose dependent sin 11 NA
757 43.53 humidity 60.0 14400 < th dose dependent sin 6 NA
823 43.56 atmosphere 1015.0 14400 < th dose independent rect. 4 1
846 43.57 wind 3.0 90 < th dose independent rect. 2 1
849 43.57 atmosphere 1015.0 14400 < th dose independent rect. 1 1
851 43.57 atmosphere 1015.0 14400 < th dose independent rect. 11 1
858 43.57 atmosphere 995.0 10 > th dose independent rect. 10 10
878 43.58 atmosphere 1015.0 14400 > th dose independent rect. 8 4
918 43.58 atmosphere 1015.0 14400 > th dose dependent rect. 2 1
920 43.58 atmosphere 1015.0 14400 > th dose dependent rect. 1 3
923 43.58 atmosphere 1015.0 14400 > th dose dependent rect. 24 5
926 43.59 atmosphere 1015.0 14400 > th dose independent rect. 1 1
939 43.59 atmosphere 1015.0 14400 < th dose independent rect. 9 1