BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0295900 Os11g0295900|011-071-B09
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20840.1 | chr3:7300764-7303370 FORWARD LENGTH=575 79 2e-15
AT5G17430.1 | chr5:5742542-5745568 REVERSE LENGTH=585 79 3e-15
AT1G51190.1 | chr1:18977517-18980305 FORWARD LENGTH=569 78 5e-15
AT5G57390.1 | chr5:23253459-23256437 REVERSE LENGTH=559 70 1e-12
AT1G72570.1 | chr1:27331381-27333698 FORWARD LENGTH=416 61 7e-10
AT4G37750.1 | chr4:17739782-17742189 FORWARD LENGTH=556 59 3e-09
AT5G10510.3 | chr5:3315991-3320008 FORWARD LENGTH=605 55 4e-08
AT5G65510.1 | chr5:26185829-26189413 FORWARD LENGTH=499 52 5e-07
>AT3G20840.1 | chr3:7300764-7303370 FORWARD LENGTH=575
Length = 574
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 44/54 (81%)
Query: 7 TQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLKDS 60
T+ YDIAAIKFRGLNAVTNF+++RYDVK+I+ESS LPIG G +RLK++
Sbjct: 316 TEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESSTLPIGGGAAKRLKEA 369
>AT5G17430.1 | chr5:5742542-5745568 REVERSE LENGTH=585
Length = 584
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 6 GTQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLKDSSDHTD 65
GTQ YDIAAIKFRGL+AVTNFDM+RY+VK+I+ES +LPIG+ + +RLKD ++
Sbjct: 344 GTQEEAAEAYDIAAIKFRGLSAVTNFDMNRYNVKAILESPSLPIGS-SAKRLKDVNNPVP 402
Query: 66 NVMDINVNTEPNNVVS 81
+M N +E N VS
Sbjct: 403 AMMISNNVSESANNVS 418
>AT1G51190.1 | chr1:18977517-18980305 FORWARD LENGTH=569
Length = 568
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 44/54 (81%)
Query: 7 TQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLKDS 60
T+ YDIAAIKFRGLNAVTNF+++RYDVK+I+ES+ LPIG G +RLK++
Sbjct: 325 TEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESNTLPIGGGAAKRLKEA 378
>AT5G57390.1 | chr5:23253459-23256437 REVERSE LENGTH=559
Length = 558
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 7 TQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLKDSSDHTDN 66
TQ YDIAAIKFRGLNAVTNFD+SRYDVKSI S NLP+G G + ++ D
Sbjct: 338 TQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIA-SCNLPVG-GLMPKPSPATAAADK 395
Query: 67 VMDINVNTEPNNVVSSHFTNGVGNYGSQHYGYNGWSPISMQPIPSQY 113
+D++ + P ++ + T V + H G + I ++P P+ +
Sbjct: 396 TVDLSPSDSP-SLTTPSLTFNVATPVNDHGGTFYHTGIPIKPDPADH 441
>AT1G72570.1 | chr1:27331381-27333698 FORWARD LENGTH=416
Length = 415
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 31/41 (75%)
Query: 7 TQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNL 47
TQ YDIAAIKFRGLNAVTNFD++RYDVK I SS +
Sbjct: 358 TQEEAAEAYDIAAIKFRGLNAVTNFDINRYDVKRICSSSTI 398
>AT4G37750.1 | chr4:17739782-17742189 FORWARD LENGTH=556
Length = 555
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%)
Query: 6 GTQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTR 55
GTQ YD+AAIKFRG NAVTNFD++RYDV I+ S+ L G R
Sbjct: 417 GTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSGELARR 466
>AT5G10510.3 | chr5:3315991-3320008 FORWARD LENGTH=605
Length = 604
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 36/41 (87%), Gaps = 2/41 (4%)
Query: 20 IKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLKDS 60
IKFRG+NAVTNF+M+RYDV++I++S+ LPIG G +RLK S
Sbjct: 436 IKFRGINAVTNFEMNRYDVEAIMKSA-LPIG-GAAKRLKLS 474
>AT5G65510.1 | chr5:26185829-26189413 FORWARD LENGTH=499
Length = 498
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 20 IKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLK 58
IKFRG+NAVTNF+M+RYD+++++ SS LP+G +R K
Sbjct: 379 IKFRGINAVTNFEMNRYDIEAVMNSS-LPVGGAAAKRHK 416
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,239,595
Number of extensions: 287554
Number of successful extensions: 620
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 8
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)