FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0290600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serpin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.029) R2 : 0.104
β1 : -0.768 (0.106) R2dD : 0.106 R2D : 0.0907
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.139 (0.062) R2dN8 : 0.0132 R2N8 : -0.00232
σ : 0.545
deviance : 136.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.95 0.519 5.19 4.24 0.00764 154 -0.484 319 -0.0359 16.7 15 4295 -- --
132.75 0.541 3.03 -0.723 0.0158 1.22 -0.52 -- -0.124 17.4 14.65 3936 -- --
122.53 0.516 5.19 4.23 0.0219 154 -- 319 -0.0366 21.2 15 4290 -- --
129.83 0.531 3 -0.468 0.0506 0.618 -- -- 0.00111 1.32 47.77 5827 -- --
122.56 0.516 5.19 4.23 -- 154 -- 319 -0.0368 -- 15 4289 -- --
135.54 0.546 3.03 -0.775 0.0281 -- -0.506 -- -0.137 18.6 -- -- -- --
136.07 0.546 3.04 -0.769 0.0489 -- -- -- -0.139 22.6 -- -- -- --
130 0.531 3 -0.474 -- 0.61 -- -- -0.00477 -- 50.67 5859 -- --
132.38 0.536 2.97 -- 0.062 0.707 -- -- 0.157 23.2 61.41 47520 -- --
136.22 0.545 3.03 -0.768 -- -- -- -- -0.139 -- -- -- -- --
151.65 0.576 3.02 -- 0.046 -- -- -- -0.0535 21.4 -- -- -- --
132.26 0.536 2.96 -- -- 0.824 -- -- 0.199 -- 63.73 13234 -- --
151.78 0.575 3.01 -- -- -- -- -- -0.0537 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.17 temperature 15.0 4320 > th dose independent rect. 4 5
2 120.18 temperature 20.0 4320 > th dose independent rect. 16 1
4 120.23 temperature 15.0 4320 < th dose independent rect. 4 2
5 120.24 temperature 20.0 4320 < th dose independent rect. 16 1
7 120.48 temperature 15.0 4320 > th dose independent rect. 4 2
16 121.19 radiation 40.0 4320 > th dose independent rect. 7 1
32 121.19 radiation 40.0 4320 > th dose dependent rect. 7 1
49 121.24 temperature 20.0 4320 < th dose independent rect. 19 1
50 121.26 humidity 90.0 4320 > th dose dependent rect. 12 5
52 121.33 temperature 20.0 4320 > th dose independent rect. 16 4
57 121.36 temperature 20.0 4320 > th dose independent rect. 19 1
59 121.37 temperature 20.0 4320 < th dose independent rect. 16 4
61 121.42 humidity 90.0 4320 > th dose independent rect. 15 2
63 121.43 wind 9.0 14400 < th dose independent rect. 23 1
69 121.53 wind 9.0 14400 > th dose dependent rect. 23 1
71 121.62 wind 9.0 14400 > th dose independent rect. 23 1
74 121.63 humidity 90.0 4320 > th dose dependent rect. 13 1
81 121.82 temperature 15.0 4320 < th dose dependent rect. 18 13
88 121.84 temperature 15.0 4320 < th dose dependent rect. 16 15
123 121.88 temperature 15.0 4320 < th dose dependent rect. 22 22
151 121.96 temperature 15.0 4320 < th dose dependent rect. 3 23
153 121.97 temperature 15.0 4320 < th dose dependent sin 12 NA
168 121.99 temperature 15.0 4320 < th dose dependent no NA NA
185 122.01 wind 3.0 4320 > th dose independent rect. 7 2
186 122.01 wind 3.0 4320 < th dose independent rect. 7 2
192 122.02 radiation 1.0 14400 > th dose independent rect. 11 1
196 122.03 radiation 1.0 14400 < th dose independent rect. 11 1
198 122.03 radiation 1.0 14400 < th dose dependent rect. 11 1
208 122.05 temperature 15.0 4320 < th dose dependent rect. 1 23
224 122.09 wind 5.0 4320 < th dose dependent rect. 7 2
240 122.17 temperature 20.0 4320 < th dose dependent rect. 17 2
327 122.44 precipitation 0.1 720 > th dose independent rect. 10 3
329 122.44 precipitation 0.1 720 > th dose dependent rect. 10 3
336 122.46 temperature 20.0 720 < th dose dependent rect. 10 3
377 122.69 wind 1.0 4320 > th dose dependent rect. 7 2
385 122.76 wind 9.0 14400 < th dose independent rect. 23 4
386 122.76 radiation 40.0 4320 < th dose independent rect. 16 16
415 122.86 radiation 40.0 4320 < th dose independent rect. 4 4
426 122.92 humidity 90.0 4320 < th dose independent rect. 16 1
433 122.93 wind 9.0 30 < th dose independent rect. 3 23
450 122.97 wind 1.0 43200 < th dose dependent rect. 4 21
469 123.02 precipitation 0.1 14400 < th dose independent rect. 13 1
474 123.02 precipitation 0.1 14400 < th dose dependent rect. 13 1
476 123.03 precipitation 0.1 14400 > th dose independent rect. 13 1
480 123.04 temperature 15.0 1440 < th dose dependent rect. 4 2
481 123.05 temperature 15.0 4320 < th dose dependent rect. 4 16
518 123.11 radiation 40.0 4320 < th dose independent rect. 24 8
550 123.19 humidity 90.0 4320 < th dose independent rect. 13 5
564 123.23 temperature 10.0 1440 > th dose dependent rect. 19 1
575 123.25 radiation 40.0 4320 < th dose independent rect. 19 13
579 123.28 radiation 40.0 4320 < th dose independent rect. 2 6
581 123.29 temperature 20.0 4320 > th dose independent sin 19 NA
586 123.30 temperature 20.0 4320 < th dose independent sin 19 NA
590 123.30 wind 1.0 43200 > th dose independent rect. 17 21
604 123.35 wind 9.0 14400 > th dose independent rect. 21 1
619 123.37 wind 9.0 14400 < th dose dependent rect. 22 1
629 123.39 temperature 15.0 4320 < th dose independent rect. 18 13
646 123.41 wind 1.0 14400 > th dose dependent rect. 22 1
678 123.46 wind 1.0 43200 < th dose independent rect. 8 22
682 123.47 temperature 20.0 1440 > th dose independent rect. 12 15
726 123.56 temperature 15.0 4320 < th dose independent rect. 21 10
729 123.56 temperature 15.0 4320 < th dose dependent sin 0 NA
764 123.60 temperature 20.0 720 < th dose independent rect. 24 20
772 123.62 temperature 15.0 4320 < th dose independent sin 7 NA
777 123.62 temperature 15.0 1440 > th dose independent rect. 4 21
799 123.65 atmosphere 1005.0 30 > th dose dependent rect. 2 1
805 123.66 temperature 20.0 720 > th dose independent rect. 3 17
808 123.66 wind 1.0 43200 > th dose independent rect. 7 23
819 123.67 temperature 15.0 4320 < th dose independent rect. 3 23
824 123.68 temperature 15.0 4320 > th dose independent rect. 17 16
829 123.68 wind 1.0 43200 > th dose independent rect. 2 23
837 123.69 temperature 25.0 1440 < th dose dependent rect. 18 6
847 123.71 atmosphere 1005.0 30 > th dose independent rect. 2 1
869 123.73 wind 3.0 30 < th dose independent rect. 2 1
879 123.74 temperature 25.0 30 < th dose independent rect. 2 1
889 123.74 wind 1.0 43200 < th dose independent rect. 10 20
893 123.74 wind 5.0 30 < th dose dependent rect. 2 1
902 123.75 temperature 15.0 4320 < th dose independent rect. 1 23
914 123.76 temperature 15.0 4320 > th dose independent rect. 15 18
920 123.76 temperature 10.0 30 > th dose dependent rect. 2 1
925 123.77 wind 9.0 30 < th dose independent rect. 2 1
926 123.77 temperature 10.0 30 > th dose independent rect. 2 1
929 123.77 humidity 50.0 30 > th dose independent rect. 2 1
932 123.77 atmosphere 995.0 30 > th dose independent rect. 2 1
933 123.77 atmosphere 1010.0 30 < th dose independent rect. 2 1
935 123.77 radiation 1.0 30 < th dose independent rect. 2 1
940 123.77 precipitation 0.1 30 < th dose independent rect. 2 1
951 123.77 temperature 15.0 4320 < th dose independent rect. 22 22
952 123.77 temperature 10.0 30 > th dose independent rect. 3 23
953 123.77 radiation 1.0 30 < th dose dependent rect. 2 1
958 123.77 precipitation 0.1 30 < th dose dependent rect. 2 1
985 123.79 humidity 50.0 30 > th dose dependent rect. 2 1