BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0290600 Os11g0290600|AK070833
         (138 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47710.1  | chr1:17558271-17560061 FORWARD LENGTH=392           46   5e-06
AT2G14540.1  | chr2:6197922-6199390 REVERSE LENGTH=408             45   8e-06

>AT1G47710.1 | chr1:17558271-17560061 FORWARD LENGTH=392
          Length = 391

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 39  YNAEAITVDFENKAGKARKQINEWTRQVTRGLINSVLPPGSIGLTTAIVLGNAIY 93
           Y A +   DF++KA +   ++N W  + T GLI  VLP GS    T ++  NA+Y
Sbjct: 118 YKAASNQADFQSKAVEVIAEVNSWAEKETNGLITEVLPEGSADSMTKLIFANALY 172



>AT2G14540.1 | chr2:6197922-6199390 REVERSE LENGTH=408
          Length = 407

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 39  YNAEAITVDFENKAGKARKQINEWTRQVTRGLINSVLPPGSIGLTTAIVLGNAIY 93
           + A    VDF +KA + R  +N W  + T  LI  +LP GS+   T  + GNA+Y
Sbjct: 147 FKASFAKVDFRHKAEEVRLDVNTWASRHTNDLIKEILPRGSVTSLTNWIYGNALY 201



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,571,709
Number of extensions: 37708
Number of successful extensions: 66
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)