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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0286300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-amyrin synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0308) R2 : -0.115
β1 : -0.659 (0.118) R2dD : 0.0888 R2D : -0.121
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.54 (0.346) R2dE : 1.16 R2E : -1.19
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -55.6 (2.78) R2dD*E : 1.14 R2D*E : -1.33
γ1 : -0.00846 (0.0657) R2dN8 : -0.000238 R2N8 : -0.0177
σ : 0.49
deviance : 109.37
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 74.59
memory length : 37
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.8
open length of G : 4.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.19 0.491 3.05 -0.319 0.0748 2.49 0.0576 -24.5 -0.00808 7.73 75.23 40 18.6 4.77
128.04 0.527 3.01 0.024 0.0786 1.93 0.527 -- -0.0274 8.31 75 42 20 4.72
109.09 0.486 3.04 -0.249 0.0788 2.52 -- -24.6 -0.00739 7.47 74.59 38 18.8 4.57
129.05 0.529 3.01 0.0234 0.0675 1.99 -- -- -0.0298 8.16 75 40 20 5.35
109.37 0.49 3.08 -0.659 -- 5.54 -- -55.6 -0.00846 -- 74.59 37 18.8 4.38
134.93 0.545 3.01 0.0317 0.0369 -- 0.526 -- -0.0294 8.03 -- -- -- --
135.75 0.546 3.01 0.0459 0.0388 -- -- -- -0.0301 7.01 -- -- -- --
129.36 0.53 3.01 0.0259 -- 2.1 -- -- -0.0228 -- 75.02 42 20 5.31
129.04 0.529 3.01 -- 0.0701 2.05 -- -- -0.027 8.17 75.04 40 20 4.01
135.83 0.545 3.01 0.0467 -- -- -- -- -0.0294 -- -- -- -- --
135.81 0.545 3.02 -- 0.0394 -- -- -- -0.0352 6.93 -- -- -- --
129.38 0.53 3.01 -- -- 2.1 -- -- -0.0228 -- 75.02 42 20 5.3
135.89 0.544 3.02 -- -- -- -- -- -0.0346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.40 humidity 80.0 30 < th dose dependent rect. 18 2
23 118.91 humidity 80.0 30 < th dose dependent rect. 18 10
26 118.96 humidity 80.0 30 < th dose dependent rect. 18 8
33 119.34 wind 1.0 10 < th dose independent rect. 21 1
40 119.34 wind 1.0 10 < th dose dependent rect. 21 1
89 122.38 humidity 80.0 90 < th dose independent rect. 18 2
92 122.63 radiation 20.0 270 > th dose dependent rect. 16 1
122 123.97 atmosphere 1005.0 90 < th dose independent rect. 18 1
133 125.20 humidity 60.0 270 < th dose independent rect. 16 1
142 125.77 radiation 40.0 720 > th dose dependent rect. 15 1
159 125.84 atmosphere 1010.0 90 < th dose dependent rect. 18 1
176 126.08 atmosphere 1000.0 270 < th dose independent rect. 5 2
177 126.19 atmosphere 1000.0 90 < th dose independent rect. 5 5
178 126.26 atmosphere 1000.0 10 < th dose independent rect. 4 6
179 126.26 atmosphere 1000.0 90 < th dose independent rect. 3 7
191 126.44 wind 3.0 30 > th dose independent rect. 18 2
199 126.58 humidity 60.0 270 < th dose dependent rect. 16 1
207 126.63 atmosphere 1000.0 720 > th dose independent rect. 23 4
213 126.76 precipitation 0.1 270 > th dose independent rect. 20 1
214 126.76 precipitation 0.1 270 > th dose dependent rect. 20 1
225 126.94 atmosphere 1000.0 10 < th dose independent rect. 7 1
233 126.94 atmosphere 1000.0 10 < th dose dependent rect. 7 1
245 126.96 atmosphere 1000.0 270 > th dose independent rect. 23 12
263 126.97 humidity 70.0 10 < th dose independent rect. 7 1
323 126.97 humidity 70.0 10 < th dose dependent rect. 7 1
386 126.99 wind 1.0 10 < th dose dependent rect. 7 1
393 127.02 wind 1.0 10 < th dose independent rect. 7 1
402 127.06 wind 9.0 30 < th dose independent rect. 20 22
428 127.53 atmosphere 1000.0 720 > th dose independent rect. 23 6
429 127.54 temperature 30.0 90 < th dose dependent rect. 18 1
431 127.55 temperature 20.0 30 > th dose independent rect. 18 2
446 127.64 atmosphere 1000.0 720 > th dose independent rect. 2 6
451 127.70 wind 1.0 720 < th dose dependent rect. 15 1
457 127.78 radiation 40.0 720 > th dose independent rect. 15 1
475 127.79 wind 7.0 30 < th dose independent rect. 18 2
480 127.86 atmosphere 1000.0 720 > th dose independent rect. 20 11
481 127.86 atmosphere 1000.0 720 > th dose independent rect. 19 13
484 127.89 wind 1.0 30 > th dose dependent rect. 18 2
485 127.91 radiation 20.0 270 > th dose independent rect. 16 1
507 127.98 atmosphere 1000.0 90 < th dose dependent rect. 3 7
513 128.01 temperature 15.0 90 > th dose independent rect. 20 22
516 128.08 atmosphere 1000.0 30 > th dose independent rect. 20 22
517 128.08 wind 9.0 30 > th dose dependent rect. 11 1
520 128.09 temperature 30.0 10 < th dose dependent rect. 18 2
542 128.16 radiation 10.0 43200 < th dose dependent rect. 19 2
571 128.27 temperature 10.0 1440 > th dose independent rect. 19 2
574 128.27 temperature 30.0 30 < th dose independent rect. 18 2
575 128.27 temperature 30.0 1440 < th dose independent rect. 19 2
579 128.27 humidity 70.0 30 > th dose independent rect. 18 2
580 128.27 humidity 50.0 1440 > th dose independent rect. 19 2
582 128.27 atmosphere 995.0 1440 > th dose independent rect. 19 2
586 128.27 radiation 1.0 1440 < th dose independent rect. 19 2
606 128.27 temperature 10.0 1440 > th dose independent rect. 21 22
609 128.27 radiation 1.0 1440 < th dose dependent rect. 19 2
617 128.27 atmosphere 1005.0 90 < th dose dependent rect. 5 5
624 128.29 wind 1.0 720 < th dose independent rect. 15 1
625 128.29 radiation 1.0 90 < th dose dependent rect. 18 1
629 128.30 precipitation 0.1 30 < th dose independent rect. 18 2
631 128.30 precipitation 0.1 30 < th dose dependent rect. 18 2
634 128.33 atmosphere 1000.0 720 > th dose independent rect. 24 10
641 128.36 radiation 1.0 30 < th dose independent rect. 18 2
642 128.36 precipitation 0.1 30 < th dose independent rect. 20 22
643 128.36 precipitation 0.1 30 < th dose dependent rect. 20 22
655 128.40 atmosphere 995.0 30 > th dose independent rect. 18 2
664 128.41 temperature 10.0 30 > th dose independent rect. 18 2
766 128.70 atmosphere 1000.0 720 > th dose independent rect. 20 9
781 128.76 atmosphere 1000.0 10 < th dose dependent rect. 10 1
823 128.87 wind 9.0 30 > th dose independent rect. 11 1
836 128.87 atmosphere 995.0 90 > th dose independent rect. 9 11
902 128.96 atmosphere 1000.0 270 > th dose independent rect. 3 12
942 128.98 atmosphere 1000.0 10 > th dose independent rect. 1 11
984 129.08 atmosphere 1005.0 90 > th dose dependent rect. 12 11
996 129.13 atmosphere 1000.0 270 > th dose independent rect. 22 22