Os11g0276300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Carbohydrate kinase domain containing protein.
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Os11g0276300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Carbohydrate kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.49 | 0.223 | 9.74 | -1.04 | 0.846 | -0.555 | -0.762 | 0.224 | -0.186 | 1.06 | 19.85 | 686 | -- | -- |
| 22.52 | 0.221 | 9.74 | -1.04 | 0.844 | -0.632 | -0.795 | -- | -0.183 | 1.06 | 19.71 | 666 | -- | -- |
| 24.64 | 0.231 | 9.75 | -1.05 | 0.85 | -0.391 | -- | 0.786 | -0.193 | 1.05 | 20.36 | 748 | -- | -- |
| 25.09 | 0.233 | 9.74 | -1.01 | 0.844 | -0.658 | -- | -- | -0.184 | 1.05 | 19.68 | 723 | -- | -- |
| 66.49 | 0.38 | 9.76 | -1.16 | -- | -0.739 | -- | 0.433 | -0.303 | -- | 26.13 | 897 | -- | -- |
| 25.26 | 0.236 | 9.73 | -0.913 | 0.878 | -- | -0.823 | -- | -0.135 | 0.967 | -- | -- | -- | -- |
| 28.1 | 0.248 | 9.72 | -0.883 | 0.88 | -- | -- | -- | -0.131 | 0.964 | -- | -- | -- | -- |
| 66.73 | 0.38 | 9.75 | -1.08 | -- | -0.767 | -- | -- | -0.284 | -- | 25.86 | 897 | -- | -- |
| 47.8 | 0.322 | 9.7 | -- | 0.849 | 0.35 | -- | -- | -0.0158 | 0.897 | 20.3 | 169 | -- | -- |
| 76.26 | 0.408 | 9.71 | -0.85 | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
| 48.65 | 0.326 | 9.7 | -- | 0.865 | -- | -- | -- | -0.0323 | 0.92 | -- | -- | -- | -- |
| 77.6 | 0.41 | 9.66 | -- | -- | 1.08 | -- | -- | 0.103 | -- | 45.94 | 2 | -- | -- |
| 95.34 | 0.456 | 9.69 | -- | -- | -- | -- | -- | -0.0195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 2 | 20.87 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 13 | 21.17 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 43 | 21.48 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 48 | 21.52 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 92 | 21.74 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 21 | 9 |
| 115 | 21.87 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 11 | 16 |
| 126 | 21.90 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 128 | 21.91 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 142 | 21.96 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 143 | 21.96 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 147 | 21.96 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 149 | 21.97 | temperature | 20.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 257 | 22.15 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 274 | 22.18 | temperature | 25.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 293 | 22.19 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 315 | 22.21 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 11 | 14 |
| 337 | 22.24 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 23 |
| 368 | 22.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 374 | 22.28 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 397 | 22.30 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 409 | 22.31 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 22 | 14 |
| 415 | 22.32 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 430 | 22.33 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 441 | 22.34 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 464 | 22.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 469 | 22.36 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 478 | 22.36 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 19 |
| 525 | 22.39 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 577 | 22.41 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 9 |
| 595 | 22.41 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 21 |
| 599 | 22.42 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 622 | 22.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 632 | 22.43 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 787 | 22.51 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 788 | 22.51 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 21 |
| 790 | 22.51 | temperature | 20.0 | 720 | < th | dose dependent | no | NA | NA |
| 791 | 22.51 | radiation | 10.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 809 | 22.52 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 829 | 22.53 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 843 | 22.53 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 848 | 22.54 | temperature | 15.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 865 | 22.55 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 14 |
| 867 | 22.55 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 23 | 22 |
| 873 | 22.55 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 14 |
| 877 | 22.55 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 883 | 22.56 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 10 |
| 918 | 22.58 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 10 |
| 921 | 22.58 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 933 | 22.58 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 960 | 22.60 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 963 | 22.60 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 10 |
| 964 | 22.60 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 22 | 12 |
| 965 | 22.60 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 968 | 22.60 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 978 | 22.60 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 988 | 22.61 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 989 | 22.61 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 3 |
| 992 | 22.61 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 13 |
| 995 | 22.61 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 997 | 22.61 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 3 | 19 |