BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0276300 Os11g0276300|AK103343
         (371 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19150.1  | chr5:6426280-6428402 REVERSE LENGTH=366            468   e-132

>AT5G19150.1 | chr5:6426280-6428402 REVERSE LENGTH=366
          Length = 365

 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 274/329 (83%), Gaps = 9/329 (2%)

Query: 44  VNAMSASGPVYEADAEAVVRRITPPLDRARHKGQAGKIAVIGGCREYTGAPYFAAISALK 103
           + AMS++    EADAE+V+R +TP LD  RHKGQAGKIAVIGGCREYTGAPYFAAISALK
Sbjct: 42  IRAMSSTS---EADAESVLRTVTPSLDLKRHKGQAGKIAVIGGCREYTGAPYFAAISALK 98

Query: 104 VGADLSHVFCTRDAATVIKSYSPELIVHPILEESYSVS---DGERESVSSRILTEVAKWM 160
           +GADLSHVFCT+DAA VIKSYSPELIVHP+LEESYS+S   + ++  V  ++L EV KWM
Sbjct: 99  IGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSISQLSEEDKREVQDKVLGEVGKWM 158

Query: 161 ERFDCIVVGPGLGRDSFLLDCVSNIMRHARQANIPTVVDGDGLFLITNNLSLVEGNLLAI 220
           ERFDC+V+GPGLGRD FLL+CVS IM  A+++N+P V+DGDGLFL+TN++ LV    LA+
Sbjct: 159 ERFDCLVIGPGLGRDPFLLECVSIIMLLAKKSNVPFVIDGDGLFLVTNSIDLVHSYPLAV 218

Query: 221 LTPNVYEYKRLVQKVLNCEVNEENASEQLTALCQKIGGITIMRKGKADIISDGKTVTQVS 280
           LTPNV EYKRLVQKVLNCEV+E+NA +QL +L ++IGG+TI+RKGK+D+IS+G+TV  VS
Sbjct: 219 LTPNVNEYKRLVQKVLNCEVDEQNAEDQLRSLAKQIGGVTILRKGKSDLISNGETVKSVS 278

Query: 281 TFGSPRRCGGQGDILSGSVAVFASWARHFLLTNEYPTEKSVNPMMLGCIAGSLLLRKAAS 340
            +GSPRRCGGQGDILSG VAVF SWA+      E P+E   NP +LGCIA S LLRKAAS
Sbjct: 279 IYGSPRRCGGQGDILSGGVAVFLSWAQQLKSDPESPSE---NPAILGCIAASGLLRKAAS 335

Query: 341 HAFEKNKRSTVTTDIIELLGKSLEDICPA 369
            AF K+KRST+T+DIIE LG+SLEDICPA
Sbjct: 336 LAFTKHKRSTLTSDIIECLGESLEDICPA 364



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,165,026
Number of extensions: 288159
Number of successful extensions: 655
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)