Os11g0265500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Archaea-specific enzyme related to ProFAR isomerase (HisA) and containing an additional uncharacterized domain.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0265500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Archaea-specific enzyme related to ProFAR isomerase (HisA) and containing an additional uncharacterized domain.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.99 | 0.364 | 6.34 | -1.08 | 0.795 | 0.902 | 0.255 | -0.553 | 0.197 | 0.669 | 20.51 | 290 | -- | -- |
| 61.39 | 0.365 | 6.33 | -0.994 | 0.799 | 0.969 | 0.346 | -- | 0.218 | 0.759 | 20.4 | 285 | -- | -- |
| 60.26 | 0.362 | 6.35 | -1.1 | 0.795 | 0.898 | -- | -0.597 | 0.194 | 0.641 | 20.57 | 289 | -- | -- |
| 61.58 | 0.365 | 6.34 | -0.988 | 0.795 | 0.953 | -- | -- | 0.213 | 0.702 | 20.54 | 296 | -- | -- |
| 90.03 | 0.442 | 6.34 | -1.16 | -- | 1.04 | -- | -0.374 | 0.164 | -- | 20.52 | 869 | -- | -- |
| 92.54 | 0.451 | 6.29 | -0.68 | 0.708 | -- | 0.349 | -- | 0.413 | 0.184 | -- | -- | -- | -- |
| 93.06 | 0.452 | 6.29 | -0.694 | 0.707 | -- | -- | -- | 0.412 | 0.122 | -- | -- | -- | -- |
| 90.42 | 0.443 | 6.33 | -1.09 | -- | 1.08 | -- | -- | 0.179 | -- | 20.5 | 873 | -- | -- |
| 85.41 | 0.43 | 6.3 | -- | 0.771 | 0.735 | -- | -- | 0.364 | 0.498 | 20.56 | 272 | -- | -- |
| 124.5 | 0.521 | 6.27 | -0.671 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 105.74 | 0.481 | 6.27 | -- | 0.697 | -- | -- | -- | 0.489 | 0.0666 | -- | -- | -- | -- |
| 116.13 | 0.502 | 6.31 | -- | -- | 0.657 | -- | -- | 0.297 | -- | 22.3 | 886 | -- | -- |
| 136.38 | 0.545 | 6.26 | -- | -- | -- | -- | -- | 0.497 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.88 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 23 |
| 4 | 62.49 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 7 | 62.71 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 9 | 62.77 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 21 |
| 10 | 62.77 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 23 |
| 23 | 62.91 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 25 | 62.98 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 23 |
| 26 | 62.98 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 32 | 63.06 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 35 | 63.10 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 78 | 64.11 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 83 | 64.24 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 85 | 64.30 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 23 |
| 128 | 65.11 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 19 |
| 139 | 65.30 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 20 |
| 170 | 65.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 211 | 65.74 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 230 | 65.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 255 | 65.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 269 | 65.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 271 | 65.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 275 | 65.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 283 | 65.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 299 | 66.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 312 | 66.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 345 | 66.10 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 371 | 66.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 401 | 66.21 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 406 | 66.23 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 410 | 66.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 420 | 66.25 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 453 | 66.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 458 | 66.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 469 | 66.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 528 | 66.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 562 | 66.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 595 | 66.56 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 620 | 66.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 623 | 66.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 655 | 66.68 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 737 | 66.86 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 784 | 66.97 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 875 | 67.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 890 | 67.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 894 | 67.18 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 988 | 67.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 13 |