BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0265500 Os11g0265500|AK063462
         (84 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43465.1  | chr2:18047732-18049709 REVERSE LENGTH=389          117   1e-27

>AT2G43465.1 | chr2:18047732-18049709 REVERSE LENGTH=389
          Length = 388

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 63/83 (75%)

Query: 2   SSDGWWGSFHGSDVKKNQLASEIIDHLLRECCWMNIHLTQPYGPVYEIRVHEGYGARWSQ 61
           SSDG+WG   G+D  KN+ A +II+  +  CCWMNIH+  P+G V+EIRV +GYGARWS+
Sbjct: 306 SSDGFWGVLQGTDSDKNERAMDIINRFIGNCCWMNIHIVPPHGEVFEIRVAQGYGARWSR 365

Query: 62  DGSKFIGFLEPYSPEGFSRGWKH 84
           DG+KFIGFLEPY  +G S  WKH
Sbjct: 366 DGTKFIGFLEPYMEDGHSMAWKH 388



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,184,728
Number of extensions: 83590
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 84
Length of database: 11,106,569
Length adjustment: 55
Effective length of query: 29
Effective length of database: 9,598,689
Effective search space: 278361981
Effective search space used: 278361981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)