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Os11g0256400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, SWIM-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0195) R2 : 0.177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.408 (0.0411) R2dN8 : 0.229 R2N8 : 0.177
σ : 0.368
deviance : 62.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.05 0.336 10.4 -0.015 0.441 -0.539 0.157 -0.5 0.366 22.6 81 785 -- --
51.33 0.334 10.4 0.00524 0.456 -0.582 0.0161 -- 0.372 22.5 82 779 -- --
51.12 0.333 10.4 -0.015 0.442 -0.543 -- -0.38 0.368 22.6 81.1 786 -- --
51.33 0.334 10.4 0.00691 0.456 -0.58 -- -- 0.372 22.6 81.99 784 -- --
57.35 0.353 10.4 -0.0337 -- -0.465 -- -0.29 0.386 -- 80 3147 -- --
57.34 0.355 10.4 -0.0706 0.271 -- -0.0694 -- 0.396 0.567 -- -- -- --
57.36 0.355 10.4 -0.0679 0.271 -- -- -- 0.396 0.554 -- -- -- --
57.03 0.352 10.4 -0.00574 -- -0.439 -- -- 0.39 -- 84.3 1645 -- --
51.33 0.334 10.4 -- 0.454 -0.577 -- -- 0.371 22.6 82 784 -- --
61.97 0.368 10.4 -0.0584 -- -- -- -- 0.401 -- -- -- -- --
57.48 0.355 10.4 -- 0.27 -- -- -- 0.404 0.542 -- -- -- --
57.03 0.352 10.4 -- -- -0.436 -- -- 0.389 -- 84.25 1645 -- --
62.06 0.368 10.4 -- -- -- -- -- 0.408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.59 humidity 90.0 720 < th dose dependent rect. 12 6
3 49.64 humidity 80.0 720 < th dose dependent rect. 12 8
5 49.66 humidity 80.0 720 < th dose dependent rect. 12 12
23 49.86 humidity 50.0 720 > th dose dependent rect. 9 11
26 49.88 humidity 50.0 720 > th dose independent rect. 14 14
28 49.91 humidity 50.0 720 > th dose independent rect. 9 10
29 49.93 humidity 50.0 4320 < th dose independent rect. 15 1
30 49.93 humidity 50.0 720 > th dose independent rect. 7 14
31 49.94 humidity 80.0 1440 < th dose independent rect. 11 2
32 49.94 humidity 90.0 14400 < th dose dependent rect. 3 1
35 49.98 humidity 80.0 14400 > th dose independent rect. 23 8
36 49.99 humidity 80.0 14400 < th dose independent rect. 5 2
37 49.99 humidity 50.0 720 > th dose dependent rect. 14 6
47 50.01 humidity 80.0 14400 > th dose independent rect. 4 3
52 50.02 humidity 80.0 1440 > th dose independent rect. 11 2
55 50.04 wind 3.0 14400 < th dose independent rect. 3 1
56 50.04 humidity 80.0 14400 < th dose dependent rect. 5 2
62 50.06 humidity 80.0 14400 < th dose independent rect. 22 9
77 50.12 humidity 50.0 720 > th dose dependent rect. 11 9
82 50.14 wind 1.0 43200 < th dose dependent rect. 9 4
121 50.27 humidity 80.0 14400 > th dose independent rect. 23 4
125 50.28 humidity 80.0 14400 < th dose independent rect. 22 5
133 50.30 humidity 80.0 720 < th dose dependent sin 18 NA
146 50.35 humidity 50.0 720 > th dose independent rect. 14 7
153 50.37 humidity 80.0 14400 > th dose independent rect. 24 1
157 50.38 wind 3.0 14400 > th dose independent rect. 3 1
171 50.42 humidity 50.0 720 > th dose independent rect. 24 19
172 50.42 humidity 80.0 720 < th dose dependent rect. 15 1
174 50.42 humidity 50.0 270 > th dose dependent rect. 16 11
184 50.44 humidity 70.0 270 > th dose independent rect. 15 12
185 50.44 wind 1.0 43200 < th dose dependent rect. 11 2
192 50.46 humidity 50.0 720 > th dose independent rect. 24 21
247 50.56 humidity 50.0 720 > th dose dependent rect. 9 19
259 50.59 humidity 50.0 4320 > th dose independent rect. 15 1
269 50.60 humidity 50.0 720 > th dose independent rect. 9 19
270 50.60 humidity 50.0 720 > th dose independent rect. 7 22
271 50.60 humidity 50.0 720 > th dose dependent rect. 17 2
287 50.63 radiation 30.0 43200 > th dose independent rect. 11 1
321 50.67 humidity 50.0 720 > th dose dependent sin 19 NA
328 50.68 humidity 50.0 4320 < th dose independent rect. 13 4
336 50.70 wind 1.0 14400 > th dose independent rect. 1 1
339 50.70 humidity 50.0 720 > th dose dependent rect. 24 20
374 50.77 humidity 50.0 720 > th dose dependent sin 21 NA
396 50.79 humidity 50.0 720 > th dose independent rect. 13 23
403 50.80 radiation 1.0 270 < th dose independent rect. 11 16
422 50.81 wind 9.0 43200 > th dose dependent rect. 12 2
434 50.83 temperature 30.0 43200 > th dose dependent rect. 8 1
452 50.84 radiation 30.0 43200 < th dose independent rect. 11 1
490 50.88 humidity 70.0 720 > th dose independent rect. 14 7
521 50.90 wind 3.0 14400 < th dose dependent rect. 3 3
529 50.91 wind 1.0 43200 < th dose independent rect. 8 5
534 50.91 humidity 80.0 14400 < th dose dependent rect. 22 9
546 50.93 radiation 30.0 43200 > th dose dependent rect. 11 1
551 50.94 humidity 50.0 4320 > th dose independent rect. 12 5
560 50.95 wind 9.0 43200 > th dose independent rect. 13 1
569 50.96 humidity 80.0 720 > th dose independent rect. 8 13
577 50.97 humidity 70.0 1440 > th dose dependent rect. 11 1
611 51.00 humidity 80.0 720 > th dose independent rect. 10 11
645 51.03 radiation 1.0 270 < th dose dependent rect. 11 16
652 51.04 temperature 30.0 43200 > th dose independent rect. 8 1
668 51.04 humidity 50.0 4320 > th dose independent rect. 12 18
704 51.06 humidity 50.0 4320 > th dose independent rect. 12 12
705 51.06 humidity 50.0 4320 > th dose independent rect. 12 15
717 51.07 humidity 50.0 4320 > th dose independent rect. 12 9
748 51.08 precipitation 0.1 43200 > th dose dependent rect. 19 2
759 51.09 humidity 50.0 720 > th dose independent rect. 15 4
762 51.09 radiation 1.0 270 < th dose independent rect. 6 21
766 51.10 wind 1.0 14400 > th dose independent rect. 8 2
770 51.11 humidity 50.0 4320 < th dose independent sin 16 NA
783 51.11 humidity 90.0 10 < th dose dependent rect. 15 18
789 51.12 wind 9.0 43200 < th dose independent rect. 13 1
795 51.12 wind 5.0 14400 < th dose dependent rect. 3 1
796 51.12 humidity 80.0 14400 < th dose dependent rect. 22 1
797 51.12 precipitation 0.1 4320 > th dose dependent rect. 16 1
810 51.13 humidity 80.0 720 < th dose dependent no NA NA
834 51.13 humidity 80.0 720 < th dose dependent rect. 23 22
852 51.14 humidity 50.0 4320 < th dose dependent sin 12 NA
865 51.14 humidity 80.0 720 < th dose dependent rect. 2 19
880 51.15 wind 3.0 43200 < th dose independent rect. 20 1
884 51.15 wind 3.0 14400 < th dose independent rect. 20 10
890 51.15 wind 3.0 14400 < th dose dependent rect. 24 6
912 51.16 humidity 80.0 14400 < th dose dependent rect. 22 3
924 51.17 humidity 80.0 14400 < th dose dependent rect. 22 5
925 51.17 wind 3.0 14400 < th dose dependent rect. 3 7
932 51.18 temperature 30.0 43200 < th dose independent rect. 6 3
935 51.18 temperature 30.0 43200 < th dose independent rect. 24 9
950 51.19 temperature 30.0 43200 < th dose independent rect. 21 12
958 51.19 wind 3.0 14400 < th dose dependent rect. 24 10
978 51.20 wind 1.0 14400 < th dose independent rect. 8 2
979 51.20 wind 1.0 43200 > th dose independent rect. 8 5
989 51.21 wind 1.0 43200 < th dose independent rect. 11 1
990 51.21 temperature 30.0 43200 < th dose independent rect. 8 1
995 51.21 temperature 30.0 43200 < th dose independent rect. 19 14