BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0256400 Os11g0256400|AK120007
         (364 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64260.1  | chr1:23847756-23849915 FORWARD LENGTH=720           67   2e-11
AT1G49920.1  | chr1:18481798-18484233 REVERSE LENGTH=786           60   1e-09

>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
          Length = 719

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 136/341 (39%), Gaps = 24/341 (7%)

Query: 1   VIGLDGCFFKGATNGKLLCAIGRDANNQMYLVAWAVIHKENNEEWDWFLDLLCGDLKVGD 60
           +I +D     G    KL+ A G DA N+ + +A+AV  + + + W WF   +    KV  
Sbjct: 378 LIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIRE--KVTQ 435

Query: 61  GSGWVFISDQQKGIINAVEK----W-APEAEHRNCARHIYADWKRHFNEKILQKKFWRCA 115
                 IS   + I+  V +    W  P A H+ C  H+ + +   F +  L+    +  
Sbjct: 436 RKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAG 495

Query: 116 KAPCILLFNLARAKLAQLTPPGAQAIMNTHPQH-WSRA---WFRLGSNCDSVDNN----L 167
                  F+     + +  P  A   ++  P+H W+ A     R G     +D      +
Sbjct: 496 STNQKEEFDSYMNDIKEKNP-EAWKWLDQIPRHKWALAHDSGLRYG--IIEIDREALFAV 552

Query: 168 CESFNKWILEARFFPIITMLETIRRKVMVRIHDQITTSARWNTAICPGILKKLNAYITKS 227
           C  F  +   A    ++ M + +R      +   I +S           + KL  ++T S
Sbjct: 553 CRGF-PYCTVAMTGGVMLMFDELRSSFDKSL-SSIYSSLNRGVVYTEPFMDKLEEFMTDS 610

Query: 228 AFSHAICNGASSYEVKHHDNR--FTVQLDKMACSYRYWQLSGLPCPHAISCIF-FKTNSL 284
                      S++V     +  + VQL+   C+ R +Q    PC HA++     K N L
Sbjct: 611 IPYVITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPL 670

Query: 285 DGYISDCYSVTEFKKTYSHCLEPFEGMNNWPYDDRQPLNAP 325
             Y+ +CY+V ++ KTY+    P   +  WP D R P   P
Sbjct: 671 Q-YVDECYTVEQYCKTYAATFSPVPDVAAWPEDCRVPTLFP 710



>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
          Length = 785

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 137/356 (38%), Gaps = 61/356 (17%)

Query: 1   VIGLDGCFFKGATNGKLLCAIGRDANNQMYLVAWAVIHKENNEEWDWFLDLLCGDLKVGD 60
           +I +D     G    KL+ A   DA NQ + +A+AV  + + + W WFL  +    KV  
Sbjct: 381 LIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRI--REKVTQ 438

Query: 61  GSGWVFISDQQKGIINAV----EKW-APEAEHRNCARHIYA---------DWKRHFNEKI 106
             G   IS     I+  +     +W  P A HR C  H+ +         D+  HF   +
Sbjct: 439 RQGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSPGFDYNMHF---L 495

Query: 107 LQKKFWRCAKAPCILLFNLARAKLAQLTPPGAQAIMNTHPQHWS------RAWFRLGSNC 160
           + +      K      F+    ++ +  P   + +    P  W+      R +  +  + 
Sbjct: 496 VDEAGSSSQKEE----FDSYMKEIKERNPEAWKWLDQFPPHQWALAHDDGRRYGIMRIDT 551

Query: 161 DSVDNNLCESFNKWILEARFFPIITML------------------ETIRRKVMVRIHDQI 202
           +++   +C+ F K  +      +   L                  +     VM ++ +  
Sbjct: 552 EAL-FAVCKRFRKVAMAGGVMLLFGQLKDAFAESFKLSRGSLKHGDVYTEHVMEKLEEFE 610

Query: 203 TTSARWNTAICPGILKKLNAYITKSAFSHAICNGASSYEVKHHDNRFT--VQLDKMACSY 260
           T S  W   I P         + + A+  ++     +  +   ++  +  VQL+   C+ 
Sbjct: 611 TDSDTWVITITP---------LERDAYQVSMAPKKKTRLMGQSNDSTSGIVQLNDTTCTC 661

Query: 261 RYWQLSGLPCPHAIS-CIFFKTNSLDGYISDCYSVTEFKKTYSHCLEPFEGMNNWP 315
             +Q +  PC HA++ C   K N L  Y+ DCY+V  + KTYS    P   ++ WP
Sbjct: 662 GEFQKNKFPCLHALAVCDELKINPLQ-YVDDCYTVERYHKTYSAKFSPVPELSAWP 716



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,548,035
Number of extensions: 364045
Number of successful extensions: 852
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 851
Number of HSP's successfully gapped: 2
Length of query: 364
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,364,969
Effective search space: 2208351816
Effective search space used: 2208351816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)