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Os11g0252900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.31 (0.0378) R2 : 0.702
β1 : -3.33 (0.152) R2dD : 0.558 R2D : 0.4
β2 : 0.99 (0.0764) R2dC : 0.111 R2C : 0.00576
β3 : 2.35 (0.247) R2dE : 0.194 R2E : 0.163
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.73 (0.649) R2dD*E : 0.235 R2D*E : -0.524
γ1 : -0.553 (0.0787) R2dN8 : 0.0582 R2N8 : -0.0365
σ : 0.594
deviance : 162.69
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C
peak time of C : 1.25
E
wheather : radiation
threshold : 1.502
memory length : 6077
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6
open length of G : 9.11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.32 0.58 7.31 -3.32 0.996 2.36 1.61 6.92 -0.553 1.32 1.504 6081 5.99 9.06
195.87 0.652 7.1 -3.13 1.22 0.755 2.17 -- -0.395 1.36 22.44 1789 6.28 9.68
162.69 0.594 7.31 -3.33 0.99 2.35 -- 6.73 -0.553 1.25 1.502 6077 6 9.11
198.35 0.656 7.1 -3.15 1.16 0.714 -- -- -0.41 1.2 31.72 1772 6.46 9.8
219.83 0.691 7.32 -3.4 -- 2.35 -- 7.06 -0.584 -- 1.34 5987 5.9 9.46
197.24 0.658 7.15 -3.29 0.919 -- 1.3 -- -0.605 1.44 -- -- -- --
204.06 0.669 7.15 -3.33 0.917 -- -- -- -0.612 1.36 -- -- -- --
241.55 0.727 7.13 -3.35 -- -0.386 -- -- -0.565 -- 31.35 4043 6.67 10.7
463.91 1 7.07 -- 1.07 0.983 -- -- -0.114 1.05 30.01 1484 6.69 9.12
255.87 0.747 7.14 -3.3 -- -- -- -- -0.592 -- -- -- -- --
496.92 1.04 7.07 -- 0.86 -- -- -- -0.24 1.22 -- -- -- --
278.82 0.778 6.91 -- -- -2.58 -- -- 0.403 -- 59.97 47520 6.32 11.2
542.68 1.09 7.06 -- -- -- -- -- -0.227 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.43 precipitation 0.1 14400 < th dose independent rect. 5 3
2 162.43 precipitation 0.1 14400 < th dose dependent rect. 5 3
3 162.71 precipitation 0.1 14400 > th dose independent rect. 5 3
4 162.87 precipitation 0.1 14400 > th dose dependent rect. 5 3
5 163.66 precipitation 0.1 14400 < th dose independent rect. 4 6
6 163.66 precipitation 0.1 14400 < th dose dependent rect. 4 6
7 163.73 humidity 90.0 14400 > th dose dependent rect. 7 10
8 163.74 precipitation 0.1 14400 > th dose dependent rect. 4 6
10 163.84 precipitation 0.1 14400 > th dose independent rect. 4 6
25 164.52 radiation 1.0 4320 < th dose independent rect. 6 9
27 164.60 radiation 1.0 4320 > th dose independent rect. 6 9
32 164.76 precipitation 0.1 14400 > th dose independent rect. 4 12
38 164.85 precipitation 0.1 14400 < th dose independent rect. 4 12
40 164.85 precipitation 0.1 14400 < th dose dependent rect. 4 12
43 164.97 precipitation 0.1 14400 > th dose independent rect. 4 10
53 165.14 precipitation 0.1 14400 < th dose independent rect. 4 10
54 165.14 precipitation 0.1 14400 < th dose dependent rect. 4 10
58 165.27 humidity 90.0 4320 > th dose dependent rect. 13 1
71 165.46 humidity 90.0 14400 > th dose dependent rect. 7 1
72 165.47 radiation 1.0 4320 < th dose dependent rect. 6 8
74 165.50 radiation 1.0 14400 < th dose dependent rect. 7 1
81 165.72 precipitation 0.1 14400 > th dose dependent rect. 4 12
95 166.05 humidity 90.0 14400 > th dose dependent sin 0 NA
106 166.23 humidity 90.0 14400 > th dose independent rect. 6 8
112 166.28 radiation 1.0 4320 < th dose dependent rect. 6 11
124 166.45 humidity 90.0 14400 > th dose dependent rect. 12 5
132 166.59 humidity 90.0 14400 > th dose independent rect. 6 11
135 166.61 humidity 90.0 14400 > th dose independent rect. 6 4
141 166.68 humidity 90.0 14400 > th dose independent rect. 13 1
159 166.99 precipitation 0.1 14400 > th dose independent sin 3 NA
163 167.02 precipitation 0.1 14400 < th dose independent sin 3 NA
164 167.02 precipitation 0.1 14400 < th dose dependent sin 3 NA
170 167.08 humidity 90.0 14400 > th dose dependent rect. 16 1
178 167.13 radiation 1.0 14400 < th dose independent rect. 7 2
179 167.16 humidity 90.0 14400 < th dose independent rect. 6 8
193 167.28 humidity 90.0 14400 > th dose dependent rect. 9 1
207 167.43 radiation 1.0 14400 > th dose independent rect. 7 2
231 167.64 humidity 80.0 14400 > th dose independent rect. 9 2
243 167.74 humidity 90.0 14400 < th dose independent rect. 6 4
250 167.75 wind 9.0 14400 < th dose independent rect. 5 6
252 167.77 humidity 90.0 14400 > th dose independent rect. 16 1
267 167.85 humidity 90.0 14400 > th dose independent rect. 7 1
287 167.96 humidity 70.0 1440 > th dose dependent rect. 9 4
305 168.05 humidity 80.0 14400 < th dose independent rect. 9 2
307 168.05 precipitation 0.1 14400 > th dose independent rect. 7 9
309 168.07 humidity 90.0 14400 > th dose independent sin 1 NA
343 168.30 wind 1.0 14400 > th dose dependent rect. 3 1
367 168.42 precipitation 0.1 14400 < th dose independent rect. 24 17
368 168.42 precipitation 0.1 14400 < th dose dependent rect. 24 17
370 168.43 precipitation 0.1 14400 > th dose independent rect. 24 17
398 168.54 wind 9.0 14400 < th dose dependent rect. 3 1
408 168.60 wind 9.0 14400 > th dose independent rect. 5 6
496 169.07 humidity 80.0 1440 < th dose independent rect. 10 3
524 169.24 humidity 90.0 14400 > th dose independent rect. 12 5
542 169.30 humidity 80.0 14400 < th dose independent rect. 9 5
543 169.31 precipitation 0.1 14400 > th dose independent rect. 17 1
554 169.35 humidity 80.0 1440 > th dose independent rect. 10 3
571 169.45 humidity 90.0 14400 < th dose independent rect. 7 1
579 169.48 precipitation 0.1 14400 > th dose dependent sin 4 NA
618 169.66 precipitation 0.1 14400 > th dose dependent rect. 24 17
653 169.79 wind 3.0 14400 > th dose independent rect. 3 1
660 169.81 precipitation 0.1 14400 < th dose independent rect. 14 2
661 169.81 precipitation 0.1 14400 < th dose dependent rect. 14 2
662 169.81 humidity 90.0 14400 > th dose dependent rect. 7 21
689 169.88 wind 3.0 43200 > th dose independent rect. 4 3
699 169.90 precipitation 0.1 43200 > th dose dependent rect. 13 1
704 169.92 wind 3.0 43200 < th dose independent rect. 3 4
711 169.96 humidity 90.0 14400 < th dose independent sin 1 NA
718 169.97 wind 3.0 14400 < th dose independent rect. 3 1
719 169.97 precipitation 0.1 14400 > th dose independent rect. 14 2
803 170.20 wind 3.0 43200 > th dose independent rect. 5 1
936 170.59 humidity 90.0 14400 > th dose dependent rect. 19 1
989 170.77 radiation 1.0 1440 < th dose independent rect. 20 19