BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0252900 Os11g0252900|Os11g0252900
(170 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375 127 3e-30
AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149 92 1e-19
AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325 87 5e-18
AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297 54 4e-08
>AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375
Length = 374
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Query: 9 IEDRGLLEDTIHMCIEEQVATFLHTVGYNLRNRLVHTNYDRSGETVSRYFNKVLNAIGEL 68
++ RGLL T + IE Q+A FL +G+NLR R V + SGET+SR+FN VLNA+ +
Sbjct: 60 LQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAI 119
Query: 69 RDELIRPPSLDTPTKIAGNPRWDPYFKDCIEAIDGTHIRASVRKNVESSFRGRKSHATQI 128
+ +P S + DPYFKDC+ +D HI V + + FR TQ
Sbjct: 120 SKDFFQPNSNSDTLE-----NDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQN 174
Query: 129 LMVAVDFDLRFTFVLASWEGTTHDAVVLRDALERENGLHVPQ 170
++ A FDLRF +VLA WEG+ D VL AL R N L VPQ
Sbjct: 175 VLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQ 216
>AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149
Length = 148
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 76 PSLDTPTKIAGNPRWDPYFKDCIEAIDGTHIRASVRKNVESSFRGRKSHATQILMVAVDF 135
P + P KI + R PYFKDC+ AID THI A V + SFR RK +Q ++ A +F
Sbjct: 4 PEIAVPRKIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNF 63
Query: 136 DLRFTFVLASWEGTTHDAVVLRDALER-ENGLHVP 169
D+ F +VL+ WEG+ HD+ VL DAL R N L VP
Sbjct: 64 DVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPVP 98
>AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325
Length = 324
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 15 LEDTIHMCIEEQVATFLHTVGYNLRNRLVHTNYDRSGETVSRYFNKVLNAIGELRDELIR 74
L+ T+++ IEE VA FL G+N R V + R+ ETV R F +VL A L + IR
Sbjct: 90 LQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIR 149
Query: 75 PPS----LDTPTKIAGNPRWDPYFKDCIEAIDGTHIRASVRKNVESSFRGRKSHATQILM 130
P+ P ++ + R+ PYF + A+DGTH+ V+ +++ + R +A+ +M
Sbjct: 150 TPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIM 209
Query: 131 VAVDFDLRFTFVLASWEGTTHDAVVLRDALERENGLHVP 169
D + FT++ G+ +D VL+ A + ++ +P
Sbjct: 210 AICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLP 248
>AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297
Length = 296
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 15 LEDTIHMCIEEQVATFLHTVGYNLRNRLVHTNYDRSGETVSRYFNKVLNAIGELRDELIR 74
L+ + ++ ++E VA FL N R + + + ET+ R F+ VL A+ L E IR
Sbjct: 48 LQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWRKFHDVLKAMERLAVEYIR 107
Query: 75 PPSLD----TPTKIAGNPRWDPYFKDCIEAIDGTHIRASVRKNVESSFRGRKSHATQILM 130
P ++ ++ + R+ P+ D + +SF ++
Sbjct: 108 PRKVEELRAISNRLQDDTRYWPFLMDLLGI---------------ASFN---------VL 143
Query: 131 VAVDFDLRFTFVLASWEGTTHDAVVLRDALERENGLHVP 169
D D+ FT+ G+THDA VL A+ + HVP
Sbjct: 144 AICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVP 182
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,678,563
Number of extensions: 139250
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)