Os11g0247400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hemolysin A family protein.
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Os11g0247400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hemolysin A family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.99 | 0.23 | 10.3 | -1.05 | 0.23 | 0.923 | 0.578 | -0.633 | -0.543 | 15.6 | 20.57 | 257 | -- | -- |
| 23.68 | 0.228 | 10.3 | -0.89 | 0.299 | 0.958 | 0.0177 | -- | -0.49 | 18.7 | 23.22 | 98 | -- | -- |
| 23.65 | 0.228 | 10.3 | -0.854 | 0.303 | 0.937 | -- | 0.264 | -0.482 | 18.6 | 23.02 | 83 | -- | -- |
| 23.68 | 0.228 | 10.3 | -0.89 | 0.298 | 0.961 | -- | -- | -0.49 | 18.7 | 23.22 | 98 | -- | -- |
| 25.52 | 0.235 | 10.3 | -0.983 | -- | 1.11 | -- | -0.314 | -0.518 | -- | 23.37 | 142 | -- | -- |
| 37.26 | 0.286 | 10.3 | -0.721 | 0.585 | -- | 0.627 | -- | -0.356 | 16.3 | -- | -- | -- | -- |
| 38.33 | 0.29 | 10.3 | -0.716 | 0.591 | -- | -- | -- | -0.353 | 16.4 | -- | -- | -- | -- |
| 25.56 | 0.235 | 10.3 | -0.933 | -- | 1.09 | -- | -- | -0.504 | -- | 23.37 | 139 | -- | -- |
| 43.48 | 0.309 | 10.3 | -- | 0.373 | 0.706 | -- | -- | -0.36 | 17.7 | 23.22 | 98 | -- | -- |
| 57.02 | 0.353 | 10.3 | -0.739 | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
| 51.83 | 0.337 | 10.2 | -- | 0.604 | -- | -- | -- | -0.273 | 16.4 | -- | -- | -- | -- |
| 47.14 | 0.32 | 10.3 | -- | -- | 0.939 | -- | -- | -0.364 | -- | 24.2 | 139 | -- | -- |
| 71.42 | 0.394 | 10.2 | -- | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.38 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 5 | 21.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 7 | 21.70 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 9 | 21.70 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 11 | 21.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 26 | 21.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 28 | 21.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 71 | 22.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 80 | 22.31 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 237 | 23.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 318 | 23.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 375 | 23.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 572 | 23.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 602 | 23.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 606 | 23.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 639 | 24.03 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 17 |
| 648 | 24.04 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 787 | 24.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 812 | 24.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 867 | 24.45 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 869 | 24.46 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 983 | 24.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |