BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0247400 Os11g0247400|AK066553
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25470.1  | chr3:9233039-9235022 FORWARD LENGTH=302            357   3e-99

>AT3G25470.1 | chr3:9233039-9235022 FORWARD LENGTH=302
          Length = 301

 Score =  357 bits (917), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 170/235 (72%), Positives = 204/235 (86%)

Query: 47  DEVCLERFQQYSRTYIQSWILQGKVLVDGRVVNKAGTQVSDKSIIEIKAEIPKYVCRAGH 106
           DE C+ERF +YSRT IQSWI+QGKVLVDGR V KAG  VS  + I+I AE+PK+VCR G 
Sbjct: 58  DEACVERFNEYSRTLIQSWIMQGKVLVDGRRVIKAGMPVSTTAAIKITAEVPKFVCRGGL 117

Query: 107 KLEAAIKEFGIDCDEKVALDSGLSTGGFTDCLLQHGASHVYGVDVGYGQVAEKIRVHERV 166
           KLEAA+++  +D  EKV LD+GLSTGGFTDCLL++GA+HVYGVDVGYGQVA+KIR  ++V
Sbjct: 118 KLEAALEKLDVDVSEKVVLDAGLSTGGFTDCLLRYGAAHVYGVDVGYGQVADKIRNDKKV 177

Query: 167 SVIERTNLRYLTELPQLVDLVTLDLSFISILLVMPAVVKVMKTDSTLITLIKPQFEARRS 226
           +VIERTNLRYL  LPQ VD+VTLDLSFISIL VMPA++ VMK D+TL+TL+KPQFEARR 
Sbjct: 178 TVIERTNLRYLPGLPQKVDVVTLDLSFISILKVMPAIMNVMKEDATLVTLVKPQFEARRQ 237

Query: 227 QVGGGGIVRDPLVHKEVLDRIISGVEQFGFCNKGWIESPIKGAEGNKEFLACFHR 281
           QVG GGIVRDP VH+EVL++II+GVE++GF NKG+IESPIKGA+GN EFLACF+R
Sbjct: 238 QVGKGGIVRDPEVHQEVLEKIINGVERYGFTNKGFIESPIKGADGNIEFLACFNR 292



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,005,165
Number of extensions: 239193
Number of successful extensions: 528
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)