Os11g0244100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0244100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.34 | 0.722 | 4.06 | 0.37 | 0.425 | -1.24 | -0.393 | -1.13 | 0.081 | 14.5 | 21.8 | 797 | -- | -- |
| 239.61 | 0.721 | 4.02 | 0.661 | 0.409 | -1.15 | 0.183 | -- | 0.171 | 13.1 | 22.15 | 852 | -- | -- |
| 236.65 | 0.716 | 4.06 | 0.377 | 0.428 | -1.22 | -- | -1.05 | 0.0811 | 13.9 | 21.8 | 796 | -- | -- |
| 239.65 | 0.721 | 4.02 | 0.655 | 0.412 | -1.16 | -- | -- | 0.163 | 13.6 | 22.1 | 852 | -- | -- |
| 246.38 | 0.731 | 4.05 | 0.442 | -- | -1.32 | -- | -0.99 | 0.119 | -- | 21.8 | 862 | -- | -- |
| 295.4 | 0.806 | 4.1 | 0.248 | 0.589 | -- | 0.5 | -- | -0.222 | 12 | -- | -- | -- | -- |
| 296.2 | 0.806 | 4.1 | 0.27 | 0.592 | -- | -- | -- | -0.218 | 12.5 | -- | -- | -- | -- |
| 249.3 | 0.735 | 4.02 | 0.658 | -- | -1.23 | -- | -- | 0.188 | -- | 22.26 | 900 | -- | -- |
| 249.82 | 0.736 | 4.05 | -- | 0.424 | -1.01 | -- | -- | 0.0563 | 13.5 | 22.24 | 810 | -- | -- |
| 318.17 | 0.833 | 4.11 | 0.249 | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
| 298.12 | 0.808 | 4.11 | -- | 0.588 | -- | -- | -- | -0.248 | 12.5 | -- | -- | -- | -- |
| 259.97 | 0.751 | 4.04 | -- | -- | -1.11 | -- | -- | 0.0776 | -- | 22.29 | 874 | -- | -- |
| 319.81 | 0.835 | 4.12 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.18 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 9 | 239.72 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 16 | 240.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 23 | 240.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 52 | 241.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 54 | 241.09 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 84 | 241.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 90 | 241.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 92 | 241.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 120 | 241.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 126 | 241.78 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 154 | 242.01 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 216 | 242.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 244 | 243.01 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 16 |
| 301 | 243.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 337 | 244.25 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 338 | 244.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 353 | 244.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 354 | 244.37 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 416 | 245.00 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 11 |
| 503 | 246.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 504 | 246.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 542 | 246.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 560 | 246.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 638 | 247.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 712 | 247.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 894 | 248.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 951 | 248.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 978 | 248.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |