BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0244100 Os11g0244100|Os11g0244100
         (473 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1  | chrM:89617-90054 REVERSE LENGTH=146                 62   8e-10
ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               60   3e-09
AT4G23160.1  | chr4:12129485-12134086 FORWARD LENGTH=1263          54   3e-07

>ATMG00300.1 | chrM:89617-90054 REVERSE LENGTH=146
          Length = 145

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 5   NLYVLRGSTLHGSVNAAAVSKDEPSKTNMWHMRLGYMSELGMIELMKRNLLDGCTQGNMK 64
           +LY+L+GS   G  N A  +KDE   T +WH RL +MS+ GM  L+K+  LD     ++K
Sbjct: 46  SLYILQGSVETGESNLAETAKDE---TRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLK 102

Query: 65  FCEHCVF 71
           FCE C++
Sbjct: 103 FCEDCIY 109



>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 35/59 (59%)

Query: 124 EVANTACYLINRSPFTPLNKKSPIEVWSGMPADYSQLKVFGCTTYAYVDNGKLDPRAIK 182
           + ANTA ++IN+ P T +N   P EVW      YS L+ FGC  Y + D GKL PRA K
Sbjct: 25  DAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAYIHCDEGKLKPRAKK 83



>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
          Length = 1262

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 293 EECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLP 352
           E+   +Y++F     +    EP+TY EA    +   W  AM +E+ ++E   TWE+  LP
Sbjct: 67  EKVSPLYHSFLVC--IAKAKEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLP 121

Query: 353 KQKKPVCCKWIFERK 367
             KKP+ CKW+++ K
Sbjct: 122 PNKKPIGCKWVYKIK 136



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,035,136
Number of extensions: 489160
Number of successful extensions: 1109
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1108
Number of HSP's successfully gapped: 3
Length of query: 473
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 371
Effective length of database: 8,310,137
Effective search space: 3083060827
Effective search space used: 3083060827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)