Os11g0226800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR disease resistance protein homologue.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0226800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to NBS-LRR disease resistance protein homologue.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.19 | 0.388 | 8.18 | 1.99 | 0.667 | -0.81 | -0.4 | -1.41 | 0.892 | 19.3 | 56 | 6901 | -- | -- |
| 71.03 | 0.393 | 8.17 | 1.94 | 0.653 | -0.806 | -0.413 | -- | 0.88 | 19.3 | 55.87 | 6905 | -- | -- |
| 68.6 | 0.386 | 8.18 | 1.99 | 0.667 | -0.826 | -- | -1.42 | 0.887 | 19.4 | 55.63 | 6900 | -- | -- |
| 71.44 | 0.394 | 8.18 | 1.92 | 0.662 | -0.808 | -- | -- | 0.867 | 19.4 | 55.94 | 6900 | -- | -- |
| 91.77 | 0.446 | 8.16 | 2.01 | -- | -0.852 | -- | -1.38 | 0.911 | -- | 55 | 7058 | -- | -- |
| 79.47 | 0.418 | 8.16 | 1.93 | 0.681 | -- | -0.47 | -- | 0.985 | 19.1 | -- | -- | -- | -- |
| 80.04 | 0.419 | 8.16 | 1.94 | 0.679 | -- | -- | -- | 0.984 | 19.2 | -- | -- | -- | -- |
| 93.85 | 0.451 | 8.16 | 2.04 | -- | -0.811 | -- | -- | 0.903 | -- | 52 | 7068 | -- | -- |
| 96.75 | 0.458 | 8.27 | -- | 0.67 | -1.73 | -- | -- | 0.495 | 19.2 | 56 | 47520 | -- | -- |
| 104.47 | 0.478 | 8.14 | 1.93 | -- | -- | -- | -- | 0.972 | -- | -- | -- | -- | -- |
| 179.31 | 0.626 | 8.2 | -- | 0.661 | -- | -- | -- | 0.768 | 19.4 | -- | -- | -- | -- |
| 120.42 | 0.511 | 8.25 | -- | -- | -1.72 | -- | -- | 0.485 | -- | 56.46 | 47520 | -- | -- |
| 202.58 | 0.664 | 8.19 | -- | -- | -- | -- | -- | 0.758 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 4 | 63.68 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 5 | 63.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 7 | 64.24 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 8 | 64.25 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 12 | 21 |
| 13 | 64.33 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 16 | 64.36 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 17 | 64.38 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 32 | 64.44 | radiation | 20.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 52 | 64.48 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 53 | 64.49 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 54 | 64.50 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 56 | 64.50 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 97 | 64.55 | radiation | 10.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 100 | 64.56 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 125 | 64.62 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 130 | 64.62 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 133 | 64.63 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 136 | 64.63 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 153 | 64.65 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 233 | 64.71 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 236 | 64.72 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 270 | 64.75 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 282 | 64.76 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 301 | 64.78 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 346 | 64.79 | radiation | 10.0 | 43200 | > th | dose independent | no | NA | NA |
| 539 | 64.81 | radiation | 40.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 540 | 64.81 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 543 | 64.81 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 557 | 64.82 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 668 | 64.88 | atmosphere | 1015.0 | 14400 | < th | dose dependent | sin | 4 | NA |
| 749 | 64.91 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 912 | 64.99 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 948 | 65.01 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 4 |