Os11g0207400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0207400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.86 | 0.564 | 8.72 | 0.618 | 0.0916 | 0.895 | 1.09 | 0.475 | 0.562 | 19.1 | 19.07 | 223 | -- | -- |
| 144 | 0.559 | 8.72 | 0.632 | 0.0163 | 0.92 | 1.21 | -- | 0.583 | 20.1 | 19.71 | 197 | -- | -- |
| 146.48 | 0.564 | 8.72 | 0.571 | 0.086 | 0.884 | -- | 0.504 | 0.568 | 15.1 | 17.26 | 192 | -- | -- |
| 147.29 | 0.565 | 8.71 | 0.607 | 0.298 | 1.1 | -- | -- | 0.574 | 14 | 16.66 | 197 | -- | -- |
| 146.6 | 0.564 | 8.72 | 0.593 | -- | 0.862 | -- | 0.567 | 0.559 | -- | 19.18 | 178 | -- | -- |
| 160.84 | 0.595 | 8.73 | 0.563 | 0.817 | -- | 0.688 | -- | 0.516 | 1.26 | -- | -- | -- | -- |
| 162.68 | 0.597 | 8.73 | 0.538 | 0.82 | -- | -- | -- | 0.512 | 1.47 | -- | -- | -- | -- |
| 148.04 | 0.567 | 8.72 | 0.589 | -- | 0.868 | -- | -- | 0.562 | -- | 19.16 | 179 | -- | -- |
| 156.79 | 0.583 | 8.73 | -- | 0.266 | 1.05 | -- | -- | 0.5 | 13.9 | 14.98 | 197 | -- | -- |
| 203.99 | 0.667 | 8.72 | 0.571 | -- | -- | -- | -- | 0.529 | -- | -- | -- | -- | -- |
| 170.31 | 0.61 | 8.75 | -- | 0.83 | -- | -- | -- | 0.452 | 1.49 | -- | -- | -- | -- |
| 157.18 | 0.584 | 8.73 | -- | -- | 0.861 | -- | -- | 0.496 | -- | 18.86 | 178 | -- | -- |
| 212.58 | 0.681 | 8.74 | -- | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.26 | radiation | 10 | 270 | > th | dose independent | rect. | 15 | 21 |
| 3 | 140.18 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 9 | 140.69 | humidity | 70 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 23 | 141.34 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 11 |
| 24 | 141.34 | radiation | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 26 | 141.37 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 15 |
| 27 | 141.43 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 11 |
| 42 | 141.77 | humidity | 70 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 48 | 141.91 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 54 | 142.04 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 63 | 142.25 | humidity | 70 | 90 | > th | dose independent | rect. | 4 | 13 |
| 83 | 142.57 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 20 |
| 98 | 142.77 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 99 | 142.79 | humidity | 60 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 111 | 142.87 | humidity | 60 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 127 | 143.05 | radiation | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 136 | 143.13 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 150 | 143.25 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 161 | 143.37 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 169 | 143.47 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 190 | 143.68 | radiation | 20 | 90 | < th | dose independent | sin | 5 | NA |
| 194 | 143.71 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 204 | 143.76 | humidity | 80 | 30 | < th | dose independent | rect. | 8 | 12 |
| 209 | 143.78 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 228 | 143.92 | radiation | 10 | 270 | > th | dose independent | sin | 4 | NA |
| 237 | 143.96 | humidity | 70 | 30 | > th | dose dependent | sin | 0 | NA |
| 241 | 143.99 | humidity | 60 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 258 | 144.10 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 14 |
| 287 | 144.27 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 289 | 144.28 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 22 |
| 311 | 144.39 | humidity | 60 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 339 | 144.50 | humidity | 80 | 30 | < th | dose independent | sin | 23 | NA |
| 415 | 144.72 | radiation | 20 | 90 | > th | dose independent | rect. | 7 | 5 |
| 471 | 144.87 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 12 | 20 |
| 488 | 144.92 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 491 | 144.93 | radiation | 40 | 10 | < th | dose dependent | sin | 3 | NA |
| 503 | 144.96 | humidity | 70 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 531 | 145.05 | radiation | 10 | 90 | < th | dose independent | rect. | 19 | 23 |
| 552 | 145.10 | radiation | 20 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 556 | 145.11 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 572 | 145.17 | humidity | 80 | 30 | > th | dose independent | sin | 0 | NA |
| 593 | 145.21 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 633 | 145.29 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 22 |
| 643 | 145.31 | radiation | 10 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 686 | 145.37 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 753 | 145.53 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 17 |
| 760 | 145.54 | humidity | 80 | 30 | < th | dose independent | rect. | 24 | 20 |
| 764 | 145.55 | humidity | 60 | 90 | > th | dose dependent | no | NA | NA |
| 767 | 145.55 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 770 | 145.56 | humidity | 70 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 775 | 145.58 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 10 |
| 781 | 145.58 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 20 |
| 804 | 145.62 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 888 | 145.77 | radiation | 20 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 979 | 145.94 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |