BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0207400 Os11g0207400|AK066082
         (263 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14460.1  | chr3:4851990-4856264 REVERSE LENGTH=1425            78   5e-15
AT3G14470.1  | chr3:4857940-4861104 FORWARD LENGTH=1055            69   4e-12
AT3G46730.1  | chr3:17213069-17215612 REVERSE LENGTH=848           49   3e-06

>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
          Length = 1424

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 8/229 (3%)

Query: 2   ERFLLVLDGASSYPRGMNDILDTLFMKSRAGSKAIITTMYQHLATKINKHENLPVGFLAM 61
           +RFLLVLD   S      +     F  +  GSK ++TT  + ++T     +   +  +  
Sbjct: 272 KRFLLVLDDFWSESDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTN 331

Query: 62  EDLGCMFMENALGGAHPEEY-QKLLVIGKKIAVTLRVCSPLAAKVVSGLLRENLNEKYWY 120
           E+   +    A G        Q+L  IGK+IA   +   PLAA+ ++  LR   N   WY
Sbjct: 332 EECWELISRFAFGNISVGSINQELEGIGKRIAEQCKGL-PLAARAIASHLRSKPNPDDWY 390

Query: 121 IVLNRCQQFVASSSRFVTPFILGCKLLPKHLQRCFGVLGTYPRW-TFTREELISYWMNNC 179
            V    + F + ++  +    L    LP  L+RCF +   +P+   F REEL+  WM   
Sbjct: 391 AV---SKNFSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAID 447

Query: 180 VVVSENCMKNSIENVATDYFDDLVRKAFIQPSHIP-GLYKVDDMLRDIA 227
           ++      +  +E++  DY  DLV ++F Q   I    + + D++ D+A
Sbjct: 448 LLYQPRSSRR-LEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLA 495



>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
          Length = 1054

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 4   FLLVLDGASSYPRGMNDILDTLFMKSRAGSKAIITTMYQHLAT---KINKHENLPVGFLA 60
           FLLVLD   +      D+L   F+ +  GS+ ++TT  Q +A+    ++ H   P   L+
Sbjct: 279 FLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQP---LS 335

Query: 61  MEDLGCMFMENALGGAHPEEYQKLLVIGKKIAVTLRVCSPLAAKVVSGLLRENLNEKYWY 120
             D   +FM+   G   P   +++  + ++I    R   PLA K + G+LR       W 
Sbjct: 336 DGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGL-PLAVKTLGGVLRFEGKVIEWE 394

Query: 121 IVLN-RCQQFVASSSRFVTPFILGCKLLPKHLQRCFGVLGTYPR-WTFTREELISYWMNN 178
            VL+ R     A  S  +    +    LP HL+RCF     +P+   F +++++  WM  
Sbjct: 395 RVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAE 454

Query: 179 CVVVSENCMKNSIENVATDYFDDLVRKAFIQPSHIPGLYKVDDMLRDIALY 229
             +      KN +E +  +YF +L  ++ +Q +     Y + D + ++A +
Sbjct: 455 GFLQQTRSSKN-LEELGNEYFSELESRSLLQKTKTR--YIMHDFINELAQF 502



>AT3G46730.1 | chr3:17213069-17215612 REVERSE LENGTH=848
          Length = 847

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 32  GSKAIITTMYQHLATKIN----KHENLPVGFLAMEDLGCMFMENALGGAHPEEYQKLLVI 87
           GSK IITT  + +A  +      H+   + FL  E+   +F   A       + + L   
Sbjct: 299 GSKVIITTRIRAIAEGVEGTVYAHK---LRFLTFEESWTLFERKAFSNIEKVD-EDLQRT 354

Query: 88  GKKIAVTLRVCS--PLAAKVVSGLLRENLNEKYWYIVLNRCQQFVASSSRFVTPFILGCK 145
           GK++   ++ C   PLA  V+SGLL      ++  +  +  ++   +S    T F L  K
Sbjct: 355 GKEM---VKKCGGLPLAIVVLSGLLSRKRTNEWHEVCASLWRRLKDNSIHISTVFDLSFK 411

Query: 146 LLPKHLQRCFGVLGTYPR-WTFTREELISYWMNNCVVVSENCMKNSIENVATDYFDDLVR 204
            +   L+ CF     +P  +    E+LI   +    +  +  M   +E+VA  Y D+LV 
Sbjct: 412 EMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEM--MMEDVARCYIDELVD 469

Query: 205 KAFIQPSHIPGLY----KVDDMLRDIAL 228
           ++ ++   I        ++ D+LRD+A+
Sbjct: 470 RSLVKAERIERGKVMSCRIHDLLRDLAI 497



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,665,808
Number of extensions: 229319
Number of successful extensions: 652
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)