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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0181400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mlo-related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.56 (0.0485) R2 : 0.502
β1 : -3.94 (0.233) R2dD : 0.671 R2D : 0.317
β2 : 0.923 (0.111) R2dC : 0.0814 R2C : 0.0783
β3 : 0.378 (0.243) R2dE : 0.00532 R2E : 0.0045
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.13 (0.874) R2dD*E : 0.119 R2D*E : -0.285
γ1 : -0.0628 (0.105) R2dN8 : 0.000434 R2N8 : -0.0153
σ : 0.828
deviance : 316.21
__
_____
C
peak time of C : 22.2
E
wheather : radiation
threshold : 0.5402
memory length : 4436
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.65 0.833 5.56 -4 0.911 0.399 -0.731 5.34 -0.0546 22.2 0.5764 4449 -- --
338.01 0.856 5.43 -3.1 0.926 0.292 -0.175 -- 0.194 22.9 9.969 11520 -- --
316.21 0.828 5.56 -3.94 0.923 0.378 -- 5.13 -0.0628 22.2 0.5402 4436 -- --
334.51 0.852 5.43 -3.12 0.93 0.569 -- -- 0.204 22.6 9.91 12233 -- --
363.4 0.888 5.55 -3.73 -- 0.815 -- 5.27 0.0291 -- 0.4853 4518 -- --
342.1 0.867 5.43 -2.89 0.952 -- 0.0353 -- 0.172 22.4 -- -- -- --
342.1 0.866 5.43 -2.89 0.952 -- -- -- 0.172 22.4 -- -- -- --
363.99 0.892 5.42 -2.93 -- 0.572 -- -- 0.128 -- 9.433 5988 -- --
539.45 1.08 5.37 -- 1.08 0.713 -- -- 0.762 22.5 10 13035 -- --
397.52 0.932 5.41 -2.87 -- -- -- -- 0.176 -- -- -- -- --
561.87 1.11 5.36 -- 0.937 -- -- -- 0.494 22.2 -- -- -- --
501.4 1.04 5.38 -- -- 1.37 -- -- 0.462 -- 0.009999 46385 -- --
615.12 1.16 5.34 -- -- -- -- -- 0.494 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.25 radiation 1.0 4320 < th dose dependent rect. 6 1
2 314.35 radiation 1.0 4320 < th dose dependent rect. 5 5
3 314.58 radiation 1.0 4320 < th dose dependent rect. 24 10
6 314.61 radiation 1.0 4320 < th dose dependent rect. 3 7
8 314.61 radiation 1.0 4320 < th dose dependent rect. 20 14
17 314.83 radiation 1.0 720 < th dose dependent sin 5 NA
28 315.07 radiation 1.0 4320 < th dose dependent sin 5 NA
31 315.09 humidity 90.0 4320 > th dose dependent rect. 2 2
33 315.11 radiation 1.0 720 < th dose dependent rect. 23 17
36 315.24 radiation 1.0 4320 > th dose independent rect. 6 9
39 315.32 radiation 1.0 4320 < th dose independent rect. 5 6
44 315.34 radiation 1.0 4320 < th dose independent rect. 6 9
51 315.37 radiation 1.0 4320 > th dose independent rect. 5 6
67 315.50 radiation 1.0 720 < th dose dependent rect. 1 15
89 315.78 wind 1.0 14400 > th dose independent rect. 2 1
96 315.82 radiation 1.0 4320 < th dose independent rect. 6 1
97 315.85 radiation 1.0 4320 < th dose independent sin 5 NA
100 315.92 radiation 1.0 4320 > th dose independent sin 5 NA
101 315.97 radiation 1.0 4320 > th dose independent rect. 6 1
109 316.06 radiation 1.0 4320 < th dose independent rect. 17 17
114 316.09 humidity 90.0 4320 > th dose dependent rect. 2 10
117 316.12 radiation 1.0 4320 < th dose independent rect. 3 12
118 316.12 radiation 1.0 720 < th dose dependent rect. 21 19
136 316.16 radiation 1.0 4320 < th dose independent rect. 20 19
149 316.20 wind 1.0 43200 < th dose independent rect. 9 2
150 316.20 radiation 1.0 4320 < th dose independent rect. 2 9
151 316.20 radiation 1.0 4320 < th dose independent rect. 24 11
160 316.21 radiation 1.0 4320 < th dose dependent rect. 20 20
166 316.23 radiation 1.0 4320 < th dose independent rect. 20 15
167 316.23 humidity 90.0 4320 > th dose dependent rect. 2 12
207 316.34 atmosphere 1005.0 1440 < th dose dependent rect. 22 7
208 316.36 radiation 1.0 4320 > th dose independent rect. 17 18
230 316.46 atmosphere 1005.0 43200 > th dose independent rect. 23 1
265 316.63 wind 5.0 14400 < th dose independent rect. 11 6
302 316.71 wind 1.0 14400 < th dose independent rect. 2 1
335 316.94 atmosphere 1005.0 1440 < th dose dependent rect. 2 1
337 316.94 atmosphere 1005.0 720 < th dose dependent rect. 20 15
340 316.95 atmosphere 1005.0 1440 < th dose dependent rect. 1 4
345 317.00 atmosphere 1005.0 720 < th dose dependent sin 9 NA
351 317.03 atmosphere 1005.0 720 < th dose dependent rect. 21 12
401 317.20 atmosphere 1005.0 1440 < th dose dependent rect. 23 2
444 317.40 radiation 1.0 4320 < th dose independent sin 10 NA
450 317.43 wind 5.0 14400 < th dose independent rect. 15 2
482 317.58 wind 5.0 14400 > th dose independent rect. 11 6
489 317.63 wind 3.0 14400 > th dose dependent rect. 11 5
497 317.68 wind 5.0 14400 > th dose independent rect. 15 2
500 317.68 humidity 90.0 4320 > th dose dependent sin 5 NA
504 317.70 radiation 1.0 720 < th dose dependent rect. 3 13
508 317.73 wind 7.0 14400 < th dose dependent rect. 11 4
549 317.92 wind 1.0 43200 < th dose dependent rect. 9 2
565 318.02 wind 5.0 14400 < th dose dependent rect. 11 1
568 318.03 wind 5.0 14400 > th dose independent rect. 13 4
720 318.53 humidity 80.0 4320 > th dose dependent rect. 23 1
731 318.56 radiation 1.0 4320 < th dose dependent rect. 5 23
734 318.57 radiation 1.0 4320 < th dose dependent rect. 5 20
737 318.58 wind 1.0 43200 > th dose independent rect. 9 3
741 318.58 radiation 1.0 4320 < th dose dependent rect. 24 22
743 318.59 temperature 15.0 14400 > th dose dependent rect. 8 1
764 318.61 radiation 1.0 4320 < th dose dependent no NA NA
778 318.61 radiation 1.0 4320 < th dose dependent rect. 3 22
823 318.70 radiation 1.0 4320 < th dose dependent rect. 10 23
827 318.72 radiation 1.0 720 < th dose independent rect. 1 15
842 318.78 temperature 30.0 14400 < th dose dependent rect. 8 1
859 318.89 atmosphere 1005.0 43200 > th dose independent rect. 16 12
860 318.89 wind 3.0 14400 > th dose dependent rect. 15 1
861 318.90 atmosphere 1005.0 43200 < th dose independent rect. 23 1
872 318.93 atmosphere 1005.0 43200 < th dose independent rect. 15 13
887 318.98 precipitation 0.1 14400 < th dose independent rect. 6 2
891 318.98 precipitation 0.1 14400 < th dose dependent rect. 6 2
897 318.99 atmosphere 1005.0 43200 < th dose independent rect. 23 20
906 319.01 atmosphere 1005.0 43200 < th dose independent rect. 1 1
936 319.06 atmosphere 1005.0 43200 > th dose independent sin 14 NA
968 319.10 atmosphere 1005.0 43200 < th dose independent rect. 9 8
969 319.10 atmosphere 1005.0 43200 < th dose independent rect. 8 11
984 319.11 atmosphere 1005.0 43200 > th dose independent rect. 23 20