BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0181400 Os11g0181400|011-067-B05
         (133 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11000.1  | chr1:3671935-3675909 REVERSE LENGTH=574             52   9e-08

>AT1G11000.1 | chr1:3671935-3675909 REVERSE LENGTH=574
          Length = 573

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 30/47 (63%)

Query: 40  ARWISEICVPSSLFTSRFYICSETDYEDLVVGGKRSTMEMNQTVVPN 86
           ARWISEICV SSLF S+FYICSE DY          T   NQ+ +P+
Sbjct: 77  ARWISEICVNSSLFNSKFYICSEEDYGIHKKVLLEHTSSTNQSSLPH 123



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,548,912
Number of extensions: 85424
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 106 (45.4 bits)