Os11g0170700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os11g0170700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.52 | 0.313 | 3 | -0.0575 | 0.0832 | -0.475 | 0.285 | 1.62 | 0.0906 | 12.6 | 1.026 | 16 | -- | -- |
| 46.71 | 0.318 | 2.98 | 0.000622 | 0.0733 | -0.361 | 0.407 | -- | 0.101 | 12.7 | 1.1 | 16 | -- | -- |
| 44.84 | 0.312 | 3 | -0.0501 | 0.0811 | -0.471 | -- | 1.72 | 0.0909 | 12.1 | 1.039 | 16 | -- | -- |
| 47.35 | 0.32 | 2.98 | 0.0181 | 0.0855 | -0.338 | -- | -- | 0.109 | 10.8 | 1.052 | 16 | -- | -- |
| 45.25 | 0.313 | 3 | -0.0488 | -- | -0.446 | -- | 1.71 | 0.0893 | -- | 1.062 | 16 | -- | -- |
| 49.79 | 0.331 | 2.98 | 0.0615 | 0.118 | -- | -0.0449 | -- | 0.105 | 6.94 | -- | -- | -- | -- |
| 49.8 | 0.33 | 2.98 | 0.0612 | 0.117 | -- | -- | -- | 0.106 | 7.35 | -- | -- | -- | -- |
| 47.78 | 0.322 | 2.98 | 0.0202 | -- | -0.327 | -- | -- | 0.109 | -- | 1.017 | 16 | -- | -- |
| 47.36 | 0.321 | 2.98 | -- | 0.0835 | -0.339 | -- | -- | 0.107 | 10.8 | 1.089 | 16 | -- | -- |
| 50.53 | 0.332 | 2.98 | 0.0632 | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
| 49.9 | 0.33 | 2.98 | -- | 0.118 | -- | -- | -- | 0.0988 | 7.31 | -- | -- | -- | -- |
| 47.79 | 0.322 | 2.98 | -- | -- | -0.33 | -- | -- | 0.107 | -- | 1.012 | 16 | -- | -- |
| 50.64 | 0.332 | 2.98 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.41 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 2 | 35.59 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 3 | 35.63 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 5 | 35.64 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 6 | 35.64 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 9 | 35.64 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 13 | 35.64 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 22 | 35.64 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 23 | 35.64 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 43 | 35.64 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 62 | 35.67 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 63 | 35.71 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 65 | 35.74 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 66 | 35.74 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 71 | 35.77 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 75 | 35.80 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 77 | 35.80 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 79 | 35.81 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 83 | 35.82 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 87 | 35.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 89 | 35.83 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 90 | 35.83 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 94 | 35.83 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 96 | 35.83 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 101 | 35.83 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 102 | 35.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 103 | 35.83 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 108 | 35.83 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 114 | 35.96 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 121 | 36.10 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 128 | 36.26 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 142 | 36.49 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 143 | 36.49 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 179 | 37.09 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 195 | 39.35 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 274 | 41.47 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 301 | 42.30 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 302 | 42.36 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 306 | 42.53 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 14 |
| 341 | 43.12 | wind | 1.0 | 10 | < th | dose independent | rect. | 17 | 10 |
| 352 | 43.17 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 372 | 43.34 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 373 | 43.34 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 441 | 43.85 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 478 | 44.21 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 14 |
| 492 | 44.35 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 495 | 44.37 | wind | 1.0 | 10 | > th | dose independent | sin | 15 | NA |
| 544 | 44.65 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 576 | 44.77 | humidity | 90.0 | 10 | > th | dose independent | rect. | 24 | 3 |
| 582 | 44.81 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 598 | 44.95 | wind | 1.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 609 | 45.01 | wind | 1.0 | 30 | < th | dose dependent | rect. | 17 | 10 |
| 632 | 45.10 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 637 | 45.12 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 659 | 45.18 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 705 | 45.27 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 752 | 45.44 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 788 | 45.53 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 789 | 45.54 | wind | 1.0 | 10 | < th | dose independent | sin | 17 | NA |
| 806 | 45.59 | wind | 1.0 | 10 | > th | dose independent | no | NA | NA |
| 815 | 45.60 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 816 | 45.60 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 818 | 45.62 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 864 | 45.67 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 892 | 45.74 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 10 |
| 894 | 45.74 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 12 |
| 953 | 45.85 | wind | 1.0 | 10 | > th | dose independent | rect. | 18 | 17 |
| 965 | 45.88 | wind | 7.0 | 10 | < th | dose independent | rect. | 16 | 10 |
| 977 | 45.91 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 12 |