BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0170700 Os11g0170700|J023073G03
(719 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263 363 e-100
ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241 166 6e-41
ATMG00820.1 | chrM:228573-229085 REVERSE LENGTH=171 87 3e-17
ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112 54 3e-07
>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
Length = 1262
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 281/472 (59%), Gaps = 6/472 (1%)
Query: 204 AEEPASFAEAEQHSYWRQSMIKEMRSIEANKTWRLVDPPARQHPIGLKWVYKAKKDAAGN 263
A+EP+++ EA++ W +M E+ ++E TW + P + PIG KWVYK K ++ G
Sbjct: 83 AKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGT 142
Query: 264 ITKYKACLVAKGYVQRQGIDFDEVFAPVARLKSVRLLLAHAACEGRAVHHMDVKSAFLN- 322
I +YKA LVAKGY Q++GIDF E F+PV +L SV+L+LA +A +H +D+ +AFLN
Sbjct: 143 IERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNG 202
Query: 323 ELLEEVYVAQPPGFVVDGQE----HKVLHLDKALYGLRQAQRAWYAKLDASLLMLGFHRS 378
+L EE+Y+ PPG+ + + V +L K++YGL+QA R W+ K +L+ GF +S
Sbjct: 203 DLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQS 262
Query: 379 DSEHAVYMRGMGVHRLVVGVYINDLIITGGHSGELMQFKEEMKGTFQMSDLGLLKYYLGL 438
S+H +++ L V VY++D+II + + + K ++K F++ DLG LKY+LGL
Sbjct: 263 HSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGL 322
Query: 439 EVNQSEDGITVCQSAYAQKILEVAGMAGSNPSLTPMETRLKLSKSSTAPAVDATDYRRIV 498
E+ +S GI +CQ YA +L+ G+ G PS PM+ + S S VDA YRR++
Sbjct: 323 EIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLI 382
Query: 499 GSLRYLVNLRPDLAYYVGYVSRFMEKPTVEHLAAVKRVLRYIASTIGYGCHYMRKKEAAS 558
G L YL R D+++ V +S+F E P + H AV ++L YI T+G G Y + E
Sbjct: 383 GRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAE-MQ 441
Query: 559 LVGFSDSDLAGDLDTRKSTSGVFFFLGDNPITWQSQKQKVVALSSCEAEYIAATTVACQG 618
L FSD+ DTR+ST+G FLG + I+W+S+KQ+VV+ SS EAEY A + +
Sbjct: 442 LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEM 501
Query: 619 VWXXXXXXXXXXXXXXXVTLKIDNQSAIMLSKNPIFHDRSKHIDTRYHYIRE 670
+W L DN +AI ++ N +FH+R+KHI++ H +RE
Sbjct: 502 MWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
Length = 240
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 2/223 (0%)
Query: 398 VYINDLIITGGHSGELMQFKEEMKGTFQMSDLGLLKYYLGLEVNQSEDGITVCQSAYAQK 457
+Y++D+++TG + L ++ TF M DLG + Y+LG+++ G+ + Q+ YA++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 458 ILEVAGMAGSNPSLTPMETRLKLSKSSTAPAVDATDYRRIVGSLRYLVNLRPDLAYYVGY 517
IL AGM P TP+ +L S STA D +D+R IVG+L+YL RPD++Y V
Sbjct: 65 ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 518 VSRFMEKPTVEHLAAVKRVLRYIASTIGYGCHYMRKKEAASLVGFSDSDLAGDLDTRKST 577
V + M +PT+ +KRVLRY+ TI +G Y+ K ++ F DSD AG TR+ST
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGL-YIHKNSKLNVQAFCDSDWAGCTSTRRST 182
Query: 578 SGVFFFLGDNPITWQSQKQKVVALSSCEAEYIAATTVACQGVW 620
+G FLG N I+W +++Q V+ SS E EY A A + W
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | chrM:228573-229085 REVERSE LENGTH=171
Length = 170
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 61/97 (62%)
Query: 205 EEPASFAEAEQHSYWRQSMIKEMRSIEANKTWRLVDPPARQHPIGLKWVYKAKKDAAGNI 264
+EP S A + W Q+M +E+ ++ NKTW LV PP Q+ +G KWV+K K + G +
Sbjct: 26 KEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTL 85
Query: 265 TKYKACLVAKGYVQRQGIDFDEVFAPVARLKSVRLLL 301
+ KA LVAKG+ Q +GI F E ++PV R ++R +L
Sbjct: 86 DRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122
>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
Length = 111
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 503 YLVNLRPDLAYYVGYVSRFMEKPTVEHLAAVKRVLRYIASTIGYGCHYMRKKEAASLVGF 562
YL RPDL + V +S+F + AV +VL Y+ T+G G Y + L F
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSD-LQLKAF 60
Query: 563 SDSDLAGDLDTRKSTSGV-----FFFLG 585
+DSD A DTR+S +G +FLG
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLG 88
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,826,611
Number of extensions: 536415
Number of successful extensions: 1107
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 4
Length of query: 719
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 613
Effective length of database: 8,200,473
Effective search space: 5026889949
Effective search space used: 5026889949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)