FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0167200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.96 (0.0254) R2 : 0.348
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.726 (0.0614) R2dC : 0.191 R2C : 0.145
β3 : 0.872 (0.077) R2dE : 0.176 R2E : 0.141
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.189 (0.0534) R2dN8 : 0.0211 R2N8 : 0.021
σ : 0.476
deviance : 104.24
__
_____
C
peak time of C : 22.4
E
wheather : temperature
threshold : 29.3
memory length : 4809
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.57 0.474 5.06 -0.89 0.689 0.41 -0.0573 3.63 0.0184 22.7 29.3 4709 -- --
104.77 0.477 4.98 -0.0623 0.696 0.925 -0.0824 -- 0.0784 22.8 29.9 3360 -- --
101.55 0.469 5.06 -0.888 0.688 0.431 -- 3.56 0.0212 22.6 29.2 4718 -- --
104.79 0.477 4.98 -0.0591 0.697 0.924 -- -- 0.0783 22.8 29.9 3360 -- --
130.27 0.532 5.04 -0.847 -- 0.408 -- 3.5 0.0449 -- 29.3 4518 -- --
129.5 0.533 4.96 -0.292 0.635 -- -0.164 -- 0.174 22.6 -- -- -- --
129.61 0.533 4.96 -0.286 0.636 -- -- -- 0.174 22.6 -- -- -- --
132.59 0.536 4.94 -0.0533 -- 0.84 -- -- 0.2 -- 28.89 4530 -- --
104.24 0.476 4.96 -- 0.726 0.872 -- -- 0.189 22.4 29.3 4809 -- --
154.51 0.581 4.94 -0.274 -- -- -- -- 0.177 -- -- -- -- --
131.76 0.537 4.95 -- 0.634 -- -- -- 0.206 22.6 -- -- -- --
132.52 0.536 4.93 -- -- 0.802 -- -- 0.219 -- 28.82 4562 -- --
156.49 0.584 4.94 -- -- -- -- -- 0.208 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.27 temperature 30 4320 < th dose independent rect. 13 1
2 102.28 temperature 30 4320 < th dose independent rect. 12 3
7 102.57 temperature 30 4320 > th dose independent rect. 12 3
17 102.81 humidity 60 14400 > th dose independent rect. 12 1
23 102.86 temperature 30 4320 < th dose independent rect. 6 9
110 103.22 temperature 30 4320 < th dose independent sin 4 NA
161 103.43 temperature 25 4320 > th dose dependent rect. 7 1
165 103.46 temperature 30 4320 > th dose independent sin 4 NA
193 103.56 temperature 30 4320 < th dose independent rect. 10 13
195 103.56 temperature 30 4320 < th dose independent rect. 10 19
225 103.58 humidity 80 14400 < th dose dependent rect. 16 8
231 103.60 temperature 25 4320 > th dose dependent rect. 4 5
239 103.61 humidity 80 14400 < th dose dependent rect. 17 3
279 103.63 temperature 30 4320 < th dose independent rect. 4 19
284 103.64 temperature 30 4320 < th dose independent no NA NA
412 103.73 humidity 70 14400 < th dose independent rect. 12 8
439 103.75 humidity 70 14400 > th dose independent rect. 15 5
457 103.76 humidity 70 14400 > th dose independent rect. 15 9
473 103.78 humidity 70 14400 > th dose independent sin 16 NA
479 103.79 humidity 70 14400 > th dose independent rect. 12 8
558 103.84 temperature 30 4320 > th dose independent no NA NA
651 103.85 humidity 70 14400 < th dose independent sin 17 NA
659 103.87 humidity 70 14400 < th dose independent rect. 10 10
660 103.87 humidity 70 14400 > th dose independent rect. 9 11
699 103.90 humidity 70 14400 > th dose independent rect. 9 16
709 103.90 temperature 30 4320 > th dose independent rect. 15 23
805 103.97 humidity 70 14400 < th dose independent rect. 9 8
809 103.98 temperature 30 14400 < th dose independent rect. 14 21
818 104.01 humidity 70 14400 > th dose independent rect. 15 2
828 104.02 humidity 70 14400 > th dose independent rect. 9 8
829 104.02 temperature 30 14400 > th dose independent rect. 14 21
833 104.03 humidity 70 14400 < th dose independent rect. 15 2
841 104.04 temperature 30 14400 > th dose dependent rect. 18 17
856 104.08 humidity 70 14400 < th dose independent rect. 12 2
866 104.10 temperature 30 14400 > th dose dependent rect. 10 1
875 104.12 temperature 30 4320 > th dose dependent rect. 12 1
892 104.14 humidity 80 14400 < th dose dependent sin 14 NA