BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0167200 Os11g0167200|J065166P19
         (137 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09580.1  | chr5:2972639-2974438 FORWARD LENGTH=394            139   4e-34
AT1G53345.1  | chr1:19902561-19903538 FORWARD LENGTH=326           69   1e-12

>AT5G09580.1 | chr5:2972639-2974438 FORWARD LENGTH=394
          Length = 393

 Score =  139 bits (351), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 101/136 (74%), Gaps = 2/136 (1%)

Query: 1   WYLEQLQQLDVCNLLSRGKSLAHDRFEAAGKLI--HKPFRIHLGRGLHGECLAIRADGNS 58
           +  EQL ++   +L++ G S    R   A KL+  +K F+I LGRGL+GECL +RADGN 
Sbjct: 256 YMYEQLLKISSADLIAYGNSYFSSRLIDAKKLLKLNKAFKIRLGRGLYGECLGMRADGNH 315

Query: 59  KLSHEIGLELSKMSTAAGLRPIGAVVFMQRGLLKICLRTTDSSTNTAEIAKAYGGGGKPS 118
           +LS E+G  LS  S+AAGLRPIGAV F+QR  LK+CLR+TD+ TNT+E+AKAYGGGG  S
Sbjct: 316 QLSDELGKLLSLQSSAAGLRPIGAVTFVQRNNLKMCLRSTDAITNTSEVAKAYGGGGTSS 375

Query: 119 SSSFALRMDEFNAWIS 134
           SSSF +RMDE+N WIS
Sbjct: 376 SSSFIIRMDEYNQWIS 391



>AT1G53345.1 | chr1:19902561-19903538 FORWARD LENGTH=326
          Length = 325

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 7/136 (5%)

Query: 3   LEQLQQLDVCNLLSRGKSLAHDRFEAAGKLIHKPFRIHLGRGLH-GECLAIRADGNSKLS 61
            +QL  LD  ++++RGK     + +   +++ + + I LG     G CLA+ AD  ++L 
Sbjct: 188 FDQLLSLDHESVINRGKQSLSKKHKLIHEVLEQSYEIVLGGDEEFGRCLAVNADEITELR 247

Query: 62  HEIGLELSKMSTAAGLRPIGAVVFMQRGL-----LKICLRTTDSSTNTAEIAKAYGGGGK 116
            E+G +L++ S    LR +GAVV+    L     LKI LR+  +  +T  +++ +GGGG 
Sbjct: 248 SELGNQLAEKSKNLSLRGVGAVVYRVPELGDENKLKISLRSV-AEEDTTPVSQRFGGGGH 306

Query: 117 PSSSSFALRMDEFNAW 132
            ++SSF L   EF  W
Sbjct: 307 KNASSFLLNSMEFEQW 322



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,868,424
Number of extensions: 102171
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)