Os11g0162900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0162900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.43 | 0.313 | 9.32 | 1.09 | 0.324 | -0.652 | 0.442 | 1.83 | 0.324 | 17.2 | 29.34 | 261 | -- | -- |
| 43.59 | 0.308 | 9.31 | 1.27 | 0.221 | -0.572 | 0.0847 | -- | 0.321 | 16.4 | 28.12 | 346 | -- | -- |
| 43.38 | 0.307 | 9.32 | 1.16 | 0.211 | -0.64 | -- | 0.73 | 0.296 | 16.1 | 28.4 | 370 | -- | -- |
| 43.57 | 0.307 | 9.3 | 1.26 | 0.216 | -0.571 | -- | -- | 0.323 | 16.2 | 27.98 | 353 | -- | -- |
| 44.59 | 0.311 | 9.32 | 1.12 | -- | -0.762 | -- | 0.736 | 0.266 | -- | 28.21 | 349 | -- | -- |
| 52.96 | 0.341 | 9.29 | 1.38 | 0.588 | -- | 0.393 | -- | 0.402 | 16.9 | -- | -- | -- | -- |
| 53.34 | 0.342 | 9.29 | 1.39 | 0.589 | -- | -- | -- | 0.404 | 16.8 | -- | -- | -- | -- |
| 44.94 | 0.312 | 9.31 | 1.22 | -- | -0.701 | -- | -- | 0.297 | -- | 27.8 | 354 | -- | -- |
| 83.66 | 0.426 | 9.34 | -- | 0.0181 | -0.777 | -- | -- | 0.149 | 16.3 | 27.6 | 337 | -- | -- |
| 71.74 | 0.396 | 9.29 | 1.36 | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
| 103.93 | 0.477 | 9.33 | -- | 0.564 | -- | -- | -- | 0.249 | 16.8 | -- | -- | -- | -- |
| 83.67 | 0.426 | 9.34 | -- | -- | -0.801 | -- | -- | 0.144 | -- | 27.63 | 337 | -- | -- |
| 120.76 | 0.513 | 9.32 | -- | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.45 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 3 | 42.87 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 5 | 43.15 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 6 | 43.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 13 | 43.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 33 | 44.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 35 | 44.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 37 | 44.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 46 | 44.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 52 | 44.43 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 65 | 44.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 67 | 44.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 143 | 45.05 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 149 | 45.07 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 17 |
| 169 | 45.14 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 172 | 45.17 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 196 | 45.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 207 | 45.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 210 | 45.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 239 | 45.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 278 | 45.41 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 309 | 45.48 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 317 | 45.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 326 | 45.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 341 | 45.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 357 | 45.60 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 367 | 45.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 392 | 45.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 447 | 45.72 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 460 | 45.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 469 | 45.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 479 | 45.77 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 487 | 45.78 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 571 | 45.89 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 606 | 45.93 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 631 | 45.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 684 | 46.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 752 | 46.08 | temperature | 25 | 90 | > th | dose independent | rect. | 18 | 13 |
| 762 | 46.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 776 | 46.11 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 785 | 46.12 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 810 | 46.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 811 | 46.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 812 | 46.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 14 |
| 899 | 46.22 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 903 | 46.22 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 908 | 46.23 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 922 | 46.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 2 |