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Os11g0161000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NB-ARC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0144) R2 : 0.177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.301 (0.0303) R2dN8 : 0.229 R2N8 : 0.177
σ : 0.271
deviance : 33.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.19 0.226 10.4 0.117 0.352 -0.0273 0.0559 2.49 0.294 6.43 14.65 1446 -- --
23.42 0.227 10.4 0.13 0.357 -1.18 -0.00372 -- 0.302 6.46 14.65 1446 -- --
23.19 0.224 10.4 0.117 0.352 -0.0162 -- 2.5 0.294 6.48 14.66 1448 -- --
23.15 0.224 10.4 0.0809 0.354 -1.19 -- -- 0.298 6.45 14.65 1708 -- --
29.58 0.253 10.4 0.114 -- -0.168 -- 2.27 0.298 -- 14.74 1438 -- --
26.1 0.239 10.4 0.177 0.36 -- -0.108 -- 0.314 6.78 -- -- -- --
26.12 0.239 10.4 0.175 0.36 -- -- -- 0.314 6.67 -- -- -- --
29.64 0.254 10.4 0.104 -- -1.22 -- -- 0.304 -- 14.7 1699 -- --
23.34 0.225 10.4 -- 0.345 -1.22 -- -- 0.284 6.43 14.75 1709 -- --
32.89 0.268 10.4 0.183 -- -- -- -- 0.321 -- -- -- -- --
26.92 0.243 10.4 -- 0.362 -- -- -- 0.294 6.64 -- -- -- --
29.83 0.254 10.4 -- -- -1.27 -- -- 0.286 -- 14.77 1695 -- --
33.78 0.271 10.4 -- -- -- -- -- 0.301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.29 temperature 30 720 < th dose dependent rect. 16 4
33 21.68 temperature 25 720 < th dose independent rect. 13 11
62 21.87 temperature 20 720 > th dose dependent rect. 20 1
63 21.88 temperature 25 720 < th dose independent rect. 15 5
80 21.95 temperature 25 270 < th dose dependent rect. 15 13
89 21.97 temperature 25 720 < th dose independent sin 17 NA
99 22.00 radiation 1 720 < th dose independent rect. 15 4
105 22.00 temperature 25 10 < th dose dependent rect. 17 13
126 22.04 radiation 1 720 < th dose dependent rect. 16 1
132 22.05 temperature 25 90 < th dose dependent sin 14 NA
147 22.07 temperature 15 720 > th dose dependent rect. 18 5
150 22.08 radiation 1 720 < th dose independent rect. 16 1
159 22.09 temperature 30 720 < th dose dependent sin 18 NA
175 22.11 radiation 1 720 < th dose independent rect. 10 9
178 22.12 temperature 25 720 > th dose independent rect. 14 10
180 22.12 radiation 1 720 < th dose dependent rect. 15 4
193 22.14 temperature 25 720 > th dose independent rect. 20 1
208 22.15 temperature 15 270 > th dose dependent rect. 19 11
216 22.17 temperature 15 720 > th dose independent rect. 9 16
244 22.20 temperature 10 720 > th dose dependent rect. 15 8
246 22.21 temperature 15 720 > th dose independent rect. 13 8
247 22.21 radiation 1 1440 > th dose independent rect. 7 8
277 22.24 radiation 1 720 < th dose dependent rect. 10 9
279 22.25 radiation 1 720 < th dose independent sin 17 NA
298 22.27 humidity 90 1440 < th dose independent rect. 12 1
308 22.28 humidity 90 1440 > th dose independent rect. 12 1
309 22.28 radiation 1 1440 < th dose independent rect. 7 8
352 22.32 radiation 1 720 < th dose independent rect. 8 16
353 22.32 radiation 1 720 < th dose independent rect. 12 16
354 22.32 humidity 90 1440 > th dose dependent rect. 12 1
361 22.33 temperature 15 270 > th dose independent rect. 9 14
362 22.33 radiation 1 720 < th dose independent rect. 14 14
386 22.35 radiation 1 720 < th dose independent rect. 10 18
392 22.36 temperature 25 720 > th dose independent rect. 18 4
413 22.37 radiation 1 720 < th dose independent rect. 14 10
429 22.38 radiation 1 720 < th dose independent rect. 12 12
454 22.39 radiation 1 720 < th dose dependent sin 17 NA
460 22.39 radiation 1 720 < th dose dependent rect. 12 16
469 22.40 radiation 1 720 < th dose dependent rect. 14 14
510 22.42 radiation 1 720 < th dose dependent rect. 10 18
511 22.43 radiation 1 1440 > th dose independent rect. 10 3
520 22.43 radiation 1 1440 < th dose dependent rect. 7 8
529 22.43 radiation 1 720 < th dose dependent rect. 8 16
623 22.49 temperature 15 10 > th dose dependent rect. 20 12
626 22.49 radiation 1 720 < th dose dependent rect. 12 12
647 22.51 atmosphere 1015 1440 < th dose independent rect. 1 8
655 22.51 radiation 1 720 < th dose dependent rect. 14 10
677 22.53 atmosphere 1010 720 < th dose independent rect. 19 6
704 22.55 temperature 15 720 > th dose independent rect. 15 8
707 22.55 temperature 15 720 > th dose independent rect. 11 15
733 22.57 temperature 25 720 > th dose independent sin 16 NA
734 22.57 temperature 15 720 > th dose independent sin 19 NA
746 22.57 radiation 20 720 < th dose dependent rect. 15 9
755 22.58 temperature 15 270 > th dose independent sin 10 NA
758 22.58 temperature 15 720 > th dose independent rect. 18 7
769 22.58 humidity 90 720 > th dose dependent rect. 11 10
810 22.61 temperature 15 1440 > th dose independent rect. 12 1
834 22.62 humidity 80 1440 < th dose independent rect. 8 5
840 22.62 wind 3 720 < th dose independent rect. 2 19
855 22.63 wind 3 720 < th dose independent rect. 3 17
873 22.64 temperature 15 270 > th dose independent rect. 20 18
914 22.65 wind 7 720 < th dose dependent rect. 3 17
917 22.66 temperature 15 10 > th dose independent sin 7 NA
953 22.66 temperature 15 10 > th dose independent sin 1 NA
970 22.66 wind 3 720 > th dose independent rect. 3 17