BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0161000 Os11g0161000|AK065519
(486 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425 60 4e-09
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 51 1e-06
>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
Length = 1424
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 173 MFGRRIEKEQVINFLLCNDPHD-PYVSILPIIGPQRIGKKTLVQHACLDERVRDCFS--- 228
+ GR +K ++N LL +D +++ ++G +GK TL + D RV + F
Sbjct: 168 LVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKM 227
Query: 229 --------HIFFFKE-------------DDLKTGELSLNSKASQGKYLFVIEFIWDVDEA 267
++F + +DL + ++ L S ++L V++ W ++
Sbjct: 228 WISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDS 287
Query: 268 AWTKFQSYLQNMPATGIKVVVIGRTEDIAKFGTSQPI-RVKRLSEEEYWYYFKALAFGSM 326
W FQ + G K+V+ R+E ++ ++ I ++K ++ EE W AFG++
Sbjct: 288 EWESFQVAFTDA-EEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNI 346
Query: 327 DPDE-HPKLASLAMQLSTEMNGSFLGATMFGELLRANPNTQFW 368
+ +L + +++ + G L A LR+ PN W
Sbjct: 347 SVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDW 389
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 34/238 (14%)
Query: 163 YSTYLYIDNCMFGRRIEKEQVINFLLCNDPHDPYVSILPIIGPQRIGKKTLVQHACLDER 222
+S+ +Y + G +K ++ +L +D + I+ +G +GK T+ Q D+
Sbjct: 150 WSSPVYDHTQVVGLEGDKRKIKEWLF--RSNDSQLLIMAFVGMGGLGKTTIAQEVFNDKE 207
Query: 223 VRDCFSHIFF------FKEDDLKTGELSLNSKASQG-----------------KYLFVIE 259
+ F + F E+ + L AS G +YL V++
Sbjct: 208 IEHRFERRIWVSVSQTFTEEQIMRSILRNLGDASVGDDIGTLLRKIQQYLLGKRYLIVMD 267
Query: 260 FIWDVDEAAWTKFQSYLQNMP-ATGIKVVVIGRTEDIAKFGTSQPIRVKR---LSEEEYW 315
+WD + + W K Q +P G V+V R+E +AK ++ + R LS + W
Sbjct: 268 DVWDKNLSWWDKI---YQGLPRGQGGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSW 324
Query: 316 YYFKALAFGSMDPD-EHPKLASLAMQLSTEMNGSFLGATMFGELLRANPNT-QFWKRI 371
F +AF + D E P+L + ++ T+ G L G LL + W+RI
Sbjct: 325 LLFCNVAFAANDGTCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRI 382
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,409,043
Number of extensions: 438920
Number of successful extensions: 867
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 384
Effective length of database: 8,310,137
Effective search space: 3191092608
Effective search space used: 3191092608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)