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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0156200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S28 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.75 (0.0205) R2 : 0.0243
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.0432) R2dN8 : 0.0314 R2N8 : 0.0243
σ : 0.386
deviance : 68.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.77 0.375 2.77 -0.0991 0.0414 -0.41 -0.205 1.29 0.13 5.5 1.054 16 -- --
65.15 0.376 2.75 -0.0488 0.0595 -0.314 -0.33 -- 0.145 5.29 1.066 16 -- --
63.87 0.372 2.77 -0.102 0.0405 -0.412 -- 1.34 0.129 5.7 1.077 16 -- --
65.41 0.377 2.75 -0.0476 0.0563 -0.31 -- -- 0.145 5.76 1.017 16 -- --
63.94 0.372 2.77 -0.104 -- -0.434 -- 1.37 0.131 -- 1.095 16 -- --
67.28 0.385 2.75 -0.0108 0.141 -- -0.285 -- 0.14 4.85 -- -- -- --
67.49 0.385 2.75 -0.00974 0.139 -- -- -- 0.141 4.88 -- -- -- --
65.56 0.377 2.75 -0.0494 -- -0.339 -- -- 0.146 -- 1.073 16 -- --
65.47 0.377 2.75 -- 0.0572 -0.303 -- -- 0.15 5.7 1.038 16 -- --
68.51 0.387 2.75 -0.0046 -- -- -- -- 0.145 -- -- -- -- --
67.49 0.384 2.75 -- 0.139 -- -- -- 0.143 4.88 -- -- -- --
65.62 0.377 2.75 -- -- -0.332 -- -- 0.152 -- 1.058 16 -- --
68.51 0.386 2.75 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.05 temperature 25.0 90 > th dose independent rect. 1 3
2 58.14 temperature 25.0 90 > th dose dependent rect. 2 2
4 58.45 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 58.46 wind 3.0 30 < th dose dependent rect. 2 1
7 58.47 wind 3.0 30 < th dose independent rect. 2 1
10 58.47 temperature 10.0 30 > th dose dependent rect. 2 1
15 58.48 temperature 20.0 30 > th dose independent rect. 2 1
16 58.48 humidity 80.0 30 > th dose independent rect. 2 1
17 58.48 atmosphere 1005.0 30 > th dose independent rect. 2 1
22 58.49 temperature 10.0 30 > th dose independent rect. 2 1
24 58.49 temperature 25.0 30 < th dose independent rect. 2 1
26 58.49 humidity 50.0 30 > th dose independent rect. 2 1
29 58.49 atmosphere 995.0 30 > th dose independent rect. 2 1
31 58.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 58.49 radiation 1.0 30 < th dose independent rect. 2 1
38 58.49 precipitation 0.1 30 < th dose independent rect. 2 1
39 58.49 temperature 10.0 30 > th dose independent rect. 3 23
40 58.49 humidity 50.0 30 > th dose dependent rect. 2 1
44 58.49 radiation 1.0 30 < th dose dependent rect. 2 1
49 58.49 precipitation 0.1 30 < th dose dependent rect. 2 1
52 58.54 temperature 30.0 30 < th dose dependent rect. 2 1
53 58.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
58 58.64 wind 9.0 30 < th dose independent rect. 3 23
60 58.65 wind 1.0 30 > th dose independent rect. 2 1
111 59.18 precipitation 0.1 30 < th dose independent rect. 3 23
112 59.18 precipitation 0.1 30 < th dose dependent rect. 3 23
113 59.38 temperature 25.0 270 > th dose independent rect. 2 1
119 59.45 atmosphere 995.0 30 > th dose independent rect. 3 23
132 59.96 radiation 1.0 43200 < th dose dependent rect. 3 1
137 60.06 wind 9.0 1440 < th dose independent rect. 3 1
138 60.06 temperature 10.0 1440 > th dose independent rect. 3 1
141 60.06 temperature 30.0 1440 < th dose independent rect. 3 1
145 60.06 humidity 50.0 1440 > th dose independent rect. 3 1
154 60.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 60.06 radiation 1.0 1440 < th dose independent rect. 3 1
175 60.06 temperature 10.0 1440 > th dose independent rect. 4 23
178 60.06 radiation 1.0 1440 < th dose dependent rect. 3 1
209 60.85 humidity 50.0 30 > th dose independent rect. 3 23
210 61.00 atmosphere 1005.0 10 > th dose dependent rect. 2 3
248 61.95 atmosphere 1015.0 30 < th dose independent rect. 3 23
312 62.61 temperature 25.0 1440 < th dose independent rect. 1 1
321 62.66 humidity 90.0 90 < th dose independent rect. 2 1
348 63.05 wind 1.0 10 < th dose independent rect. 15 12
368 63.18 wind 1.0 10 > th dose independent rect. 5 23
385 63.30 atmosphere 1005.0 10 > th dose independent rect. 2 3
396 63.39 wind 1.0 30 > th dose independent rect. 3 23
402 63.42 temperature 30.0 30 < th dose independent rect. 3 23
410 63.50 wind 3.0 30 < th dose dependent rect. 2 5
423 63.55 wind 1.0 10 < th dose independent rect. 6 21
451 63.69 wind 1.0 10 < th dose independent rect. 8 19
456 63.70 atmosphere 1015.0 1440 < th dose independent rect. 3 1
458 63.72 wind 1.0 10 > th dose independent sin 14 NA
462 63.72 wind 1.0 30 > th dose dependent rect. 2 1
471 63.75 wind 1.0 10 > th dose independent rect. 17 23
481 63.78 wind 9.0 30 < th dose dependent rect. 3 23
582 64.15 wind 1.0 10 < th dose independent rect. 2 5
595 64.17 humidity 80.0 4320 < th dose dependent rect. 1 1
656 64.33 wind 1.0 10 > th dose independent no NA NA
682 64.41 wind 1.0 10 > th dose independent rect. 20 13
725 64.54 wind 1.0 30 > th dose independent rect. 5 21
739 64.57 radiation 10.0 30 < th dose dependent rect. 17 9
741 64.59 precipitation 0.1 10 < th dose independent rect. 2 3
744 64.59 precipitation 0.1 10 < th dose dependent rect. 2 3
756 64.61 wind 1.0 10 > th dose independent rect. 18 15
759 64.62 atmosphere 995.0 30 > th dose independent rect. 5 21
780 64.63 temperature 10.0 30 > th dose independent rect. 5 21
782 64.63 precipitation 0.1 30 < th dose independent rect. 5 21
792 64.63 precipitation 0.1 30 < th dose dependent rect. 5 21
833 64.67 wind 9.0 30 < th dose independent rect. 5 21
843 64.67 temperature 10.0 30 > th dose dependent rect. 3 23
845 64.68 radiation 10.0 30 < th dose independent rect. 17 9
898 64.75 humidity 80.0 4320 < th dose independent rect. 1 2
924 64.78 wind 9.0 10 < th dose independent rect. 17 9
925 64.78 temperature 25.0 720 < th dose independent rect. 20 9
932 64.79 humidity 80.0 4320 > th dose independent rect. 1 1
937 64.79 humidity 50.0 30 > th dose independent rect. 5 21
943 64.80 wind 9.0 1440 < th dose independent rect. 3 3
944 64.80 temperature 10.0 1440 > th dose independent rect. 3 3
947 64.80 temperature 30.0 1440 < th dose independent rect. 3 3
951 64.80 humidity 50.0 1440 > th dose independent rect. 3 3
960 64.80 atmosphere 995.0 1440 > th dose independent rect. 3 3
962 64.80 radiation 20.0 1440 < th dose independent rect. 3 3
971 64.80 temperature 10.0 1440 > th dose independent rect. 6 21
992 64.82 precipitation 0.1 30 < th dose independent rect. 2 15
994 64.82 precipitation 0.1 30 < th dose dependent rect. 2 15