Os11g0153800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein S25 (40S ribosomal 25S subunit).
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Os11g0153800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein S25 (40S ribosomal 25S subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.61 | 0.296 | 11.7 | -0.303 | 0.653 | -0.465 | 0.129 | 1.38 | -0.267 | 15.5 | 19.1 | 4092 | -- | -- |
| 42.23 | 0.303 | 11.7 | -0.0576 | 0.649 | -0.632 | 0.0301 | -- | -0.174 | 15.2 | 18.78 | 4044 | -- | -- |
| 39.66 | 0.293 | 11.8 | -0.304 | 0.654 | -0.463 | -- | 1.4 | -0.267 | 15.5 | 19.1 | 4092 | -- | -- |
| 41.22 | 0.299 | 11.7 | -0.0781 | 0.659 | -0.856 | -- | -- | -0.226 | 15.5 | 18.1 | 4036 | -- | -- |
| 62.62 | 0.369 | 11.8 | -0.336 | -- | -0.371 | -- | 1.64 | -0.288 | -- | 19.4 | 4663 | -- | -- |
| 51.74 | 0.337 | 11.7 | 0.297 | 0.63 | -- | 0.254 | -- | -0.0519 | 15.5 | -- | -- | -- | -- |
| 51.94 | 0.337 | 11.7 | 0.301 | 0.631 | -- | -- | -- | -0.0505 | 15.5 | -- | -- | -- | -- |
| 63.75 | 0.372 | 11.7 | -0.214 | -- | -0.829 | -- | -- | -0.199 | -- | 14.7 | 13406 | -- | -- |
| 41.55 | 0.3 | 11.7 | -- | 0.651 | -0.793 | -- | -- | -0.203 | 15.5 | 18.15 | 4023 | -- | -- |
| 74.17 | 0.402 | 11.7 | 0.275 | -- | -- | -- | -- | -0.0672 | -- | -- | -- | -- | -- |
| 54.33 | 0.345 | 11.7 | -- | 0.625 | -- | -- | -- | -0.084 | 15.5 | -- | -- | -- | -- |
| 64.42 | 0.374 | 11.7 | -- | -- | -0.688 | -- | -- | -0.16 | -- | 13.94 | 13337 | -- | -- |
| 76.16 | 0.407 | 11.7 | -- | -- | -- | -- | -- | -0.0977 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 2 | 38.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 4 | 38.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 8 | 38.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 20 | 38.76 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 67 | 39.18 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 68 | 39.18 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 129 | 39.47 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 137 | 39.49 | temperature | 25 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 309 | 39.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 411 | 39.97 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 423 | 39.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 430 | 39.99 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 453 | 40.01 | temperature | 25 | 4320 | < th | dose dependent | sin | 18 | NA |
| 460 | 40.02 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 473 | 40.03 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 494 | 40.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 526 | 40.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 535 | 40.07 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 543 | 40.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 592 | 40.13 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 662 | 40.20 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 903 | 40.40 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 907 | 40.40 | wind | 7 | 14400 | > th | dose dependent | sin | 6 | NA |