BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0153800 Os11g0153800|AK058630
(108 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34555.1 | chr4:16504381-16505339 REVERSE LENGTH=109 113 2e-26
AT4G39200.1 | chr4:18257464-18258464 FORWARD LENGTH=109 112 3e-26
AT2G21580.1 | chr2:9236629-9237510 FORWARD LENGTH=109 111 6e-26
AT2G16360.1 | chr2:7076713-7077366 REVERSE LENGTH=126 109 3e-25
>AT4G34555.1 | chr4:16504381-16505339 REVERSE LENGTH=109
Length = 108
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 64/72 (88%)
Query: 37 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 96
VNN VLFD+ATYDKLLSE PK+K ITPS+LS+RLRINGSLAR+AI++L ++G IR+VS H
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96
Query: 97 SSQLIYTRATNA 108
SSQ IYTRAT+
Sbjct: 97 SSQQIYTRATHG 108
>AT4G39200.1 | chr4:18257464-18258464 FORWARD LENGTH=109
Length = 108
Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 64/71 (90%)
Query: 37 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 96
VNN VLFD+ATYDKLL+E PK+K ITPS+LS+R+RINGSLAR+AI++L ++G IR+V+ H
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96
Query: 97 SSQLIYTRATN 107
SSQ IYTRATN
Sbjct: 97 SSQQIYTRATN 107
>AT2G21580.1 | chr2:9236629-9237510 FORWARD LENGTH=109
Length = 108
Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 63/71 (88%)
Query: 37 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 96
VNN VLFD+ TYDKLL+E PK+K ITPS+LS+R+RINGSLAR+AI++L ++G IR+VS H
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96
Query: 97 SSQLIYTRATN 107
SSQ IYTRATN
Sbjct: 97 SSQQIYTRATN 107
>AT2G16360.1 | chr2:7076713-7077366 REVERSE LENGTH=126
Length = 125
Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 61/70 (87%)
Query: 37 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 96
VNN VLFD+ATYDKL+SE PK+K ITPS+LS+RLRINGSLAR+AI+DL +G IR+VS H
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112
Query: 97 SSQLIYTRAT 106
SSQ I TRAT
Sbjct: 113 SSQQINTRAT 122
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.128 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,240,020
Number of extensions: 32810
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 4
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)