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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0152500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PEBP family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0219) R2 : 0.0371
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.193 (0.0461) R2dN8 : 0.0479 R2N8 : 0.0371
σ : 0.413
deviance : 78.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.87 0.407 2.93 -0.545 0.0502 0.876 -0.132 -6.12 0.233 14.3 31.2 763 -- --
76.38 0.407 2.86 0.0924 0.0409 0.216 -0.156 -- 0.236 14 31.5 754 -- --
74.93 0.403 2.93 -0.53 0.0488 0.874 -- -6.09 0.232 13.7 31.23 751 -- --
76.42 0.407 2.86 0.0798 0.0441 0.218 -- -- 0.231 13.5 31.45 754 -- --
75.07 0.404 2.93 -0.533 -- 0.876 -- -6.1 0.232 -- 31.2 751 -- --
77.56 0.413 2.87 0.114 0.0684 -- -0.0914 -- 0.208 16.5 -- -- -- --
77.58 0.412 2.87 0.114 0.0686 -- -- -- 0.207 16.9 -- -- -- --
76.54 0.407 2.86 0.086 -- 0.22 -- -- 0.233 -- 31.47 728 -- --
76.59 0.408 2.86 -- 0.0441 0.224 -- -- 0.225 13.4 31.41 754 -- --
77.83 0.412 2.87 0.111 -- -- -- -- 0.206 -- -- -- -- --
77.92 0.413 2.87 -- 0.0666 -- -- -- 0.195 17 -- -- -- --
76.7 0.408 2.86 -- -- 0.227 -- -- 0.223 -- 31.43 754 -- --
78.15 0.413 2.87 -- -- -- -- -- 0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.26 atmosphere 1000 10 < th dose independent rect. 21 1
9 69.26 atmosphere 1000 10 < th dose dependent rect. 21 1
27 70.47 temperature 25 30 > th dose dependent rect. 21 1
42 71.02 humidity 50 720 < th dose independent rect. 13 1
44 71.11 temperature 25 30 > th dose dependent rect. 23 1
47 71.72 temperature 25 30 > th dose independent rect. 23 1
52 72.38 humidity 50 1440 > th dose independent rect. 13 2
60 73.10 atmosphere 1000 270 < th dose dependent rect. 18 4
68 73.35 humidity 50 1440 > th dose independent rect. 19 20
69 73.37 humidity 50 1440 > th dose independent rect. 10 5
71 73.39 humidity 50 1440 > th dose independent rect. 23 16
83 73.47 humidity 50 1440 > th dose independent rect. 3 12
101 73.67 temperature 30 720 > th dose independent rect. 17 1
165 74.15 temperature 30 720 > th dose independent rect. 12 1
194 74.34 temperature 25 10 > th dose dependent rect. 21 10
197 74.36 atmosphere 1000 90 < th dose dependent rect. 10 1
222 74.42 temperature 30 1440 < th dose independent rect. 17 1
233 74.47 temperature 30 720 < th dose independent rect. 15 8
243 74.51 humidity 50 720 > th dose independent sin 7 NA
244 74.54 humidity 70 720 > th dose independent rect. 18 1
266 74.57 temperature 30 720 < th dose independent rect. 15 15
267 74.57 radiation 40 270 > th dose independent rect. 13 20
272 74.58 radiation 40 270 > th dose independent rect. 13 2
318 74.63 humidity 60 720 < th dose dependent rect. 13 2
326 74.66 temperature 30 720 > th dose independent rect. 12 6
348 74.72 atmosphere 995 720 > th dose independent rect. 18 9
391 74.80 humidity 60 720 > th dose independent rect. 15 5
392 74.80 radiation 1 720 < th dose independent rect. 18 9
399 74.86 temperature 30 720 < th dose independent rect. 11 16
401 74.87 humidity 70 270 < th dose dependent rect. 18 1
402 74.88 temperature 30 720 > th dose independent sin 14 NA
403 74.88 temperature 30 720 < th dose independent rect. 15 6
409 74.90 temperature 30 720 < th dose independent sin 13 NA
411 74.90 temperature 30 1440 < th dose independent rect. 16 12
412 74.90 humidity 60 720 > th dose independent rect. 15 14
419 74.91 humidity 60 720 > th dose independent rect. 15 12
457 74.94 radiation 40 270 > th dose independent sin 13 NA
473 74.96 temperature 30 1440 < th dose independent rect. 16 4
499 75.01 wind 3 10 > th dose independent rect. 21 1
501 75.01 temperature 30 720 < th dose independent rect. 11 8
544 75.07 radiation 30 270 > th dose dependent rect. 13 2
549 75.08 humidity 80 30 < th dose dependent rect. 16 2
571 75.10 temperature 25 90 > th dose independent rect. 20 2
572 75.10 humidity 60 720 > th dose independent rect. 8 19
573 75.10 radiation 30 270 > th dose dependent rect. 13 19
585 75.11 atmosphere 995 720 > th dose independent rect. 15 15
632 75.14 humidity 70 270 < th dose independent rect. 18 1
638 75.15 temperature 30 720 < th dose independent rect. 13 8
639 75.15 humidity 60 720 > th dose independent rect. 8 11
662 75.18 humidity 60 720 > th dose independent rect. 1 18
675 75.19 temperature 30 720 < th dose independent rect. 9 18
687 75.20 temperature 30 720 > th dose dependent rect. 13 1
688 75.20 atmosphere 1000 30 > th dose dependent rect. 14 4
698 75.21 atmosphere 995 720 > th dose independent rect. 15 6
718 75.21 temperature 30 720 < th dose independent rect. 15 23
719 75.21 atmosphere 995 1440 > th dose independent rect. 16 23
720 75.21 wind 3 90 > th dose dependent rect. 16 1
755 75.24 atmosphere 995 1440 > th dose independent rect. 18 23
774 75.25 atmosphere 1000 30 > th dose independent rect. 18 10
776 75.25 humidity 60 720 > th dose independent rect. 15 22
803 75.27 temperature 30 720 < th dose independent rect. 9 10
807 75.27 atmosphere 995 1440 > th dose independent rect. 18 21
817 75.28 atmosphere 995 720 > th dose independent rect. 8 19
822 75.29 atmosphere 995 1440 < th dose independent rect. 18 1
849 75.29 atmosphere 995 1440 < th dose dependent rect. 18 1
861 75.29 radiation 10 720 < th dose dependent rect. 18 9
898 75.30 humidity 60 720 > th dose independent rect. 15 20
959 75.33 temperature 30 720 < th dose independent rect. 7 14
960 75.33 humidity 60 720 > th dose independent rect. 11 16
961 75.33 temperature 30 720 < th dose independent rect. 22 23
976 75.34 temperature 30 720 < th dose independent rect. 7 23
983 75.35 humidity 80 90 < th dose independent rect. 16 1
991 75.35 wind 9 10 > th dose independent rect. 17 18
997 75.35 temperature 30 720 < th dose independent rect. 4 23
1000 75.36 temperature 30 1440 < th dose independent rect. 12 1