BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0152500 Os11g0152500|AF159882
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176 275 6e-75
AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178 264 2e-71
AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178 245 7e-66
AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176 206 4e-54
AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176 197 2e-51
AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174 180 3e-46
>AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176
Length = 175
Score = 275 bits (704), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 152/175 (86%), Gaps = 2/175 (1%)
Query: 1 MSR-SVEPLVVGRVIGEVLDTFNPCMKMIVTYNSNKLVFNGHELYPSAVVSKPRVEVQGG 59
M+R S +PL+VGRVIG+V+D +KM VTYNS+K V+NGHEL+PS V KP+VEV GG
Sbjct: 1 MARISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGG 60
Query: 60 DLRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISYESPKPNIGIHR 119
D+RSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD SFG+E+I YE P+PNIGIHR
Sbjct: 61 DMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHR 120
Query: 120 FIFVLFKQKRRQTVI-VPSFRDHFNTRRFAEENDLGLPVAAVYFNAQRETAARRR 173
F+++LFKQ RR +V+ VPS+RD FNTR FA ENDLGLPVAAV+FN QRETAARRR
Sbjct: 121 FVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175
>AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178
Length = 177
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/174 (72%), Positives = 153/174 (87%), Gaps = 4/174 (2%)
Query: 2 SRSVEPLVVGRVIGEVLDTFNPCMKMIVTYNSNKLVFNGHELYPSAVVSKPRVEVQGGDL 61
+R +EPL++GRV+G+VLD F P KM V+YN K V NGHEL+PS+V SKPRVE+ GGDL
Sbjct: 6 TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYN-KKQVSNGHELFPSSVSSKPRVEIHGGDL 64
Query: 62 RSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISYESPKPNIGIHRFI 121
RSFFTLVM DPDVPGPSDP+L+EHLHWIVT+IPGTTDA+FG+EV+SYE P+P+IGIHRF+
Sbjct: 65 RSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFV 124
Query: 122 FVLFKQKRRQTVI--VPSFRDHFNTRRFAEENDLGLPVAAVYFNAQRETAARRR 173
FVLF+QK+R+ + +PS RDHFNTR+FA E DLGLPVAAV+FNAQRETAAR+R
Sbjct: 125 FVLFRQKQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177
>AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178
Length = 177
Score = 245 bits (626), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 116/174 (66%), Positives = 139/174 (79%), Gaps = 1/174 (0%)
Query: 1 MSRSVEPLVVGRVIGEVLDTFNPCMKMIVTYNSNKLVFNGHELYPSAVVSKPRVEVQGGD 60
MSR +EPL+VGRVIG+VL+ FNP + M VT+NSN +V NGHEL PS ++SKPRVE+ G D
Sbjct: 1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQD 60
Query: 61 LRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISYESPKPNIGIHRF 120
LRSFFTL+M DPD P PS+PY+RE+LHW+VTDIPGTTDASFGRE++ YE+PKP GIHR+
Sbjct: 61 LRSFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRY 120
Query: 121 IFVLFKQKRRQTV-IVPSFRDHFNTRRFAEENDLGLPVAAVYFNAQRETAARRR 173
+F LFKQ+ RQ V P R+ FNT F+ L PVAAVYFNAQRETA RRR
Sbjct: 121 VFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174
>AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176
Length = 175
Score = 206 bits (524), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 6 EPLVVGRVIGEVLDTFNPCMKMIVTYNSNKLVFNGHELYPSAVVSKPRVEVQGGDLRSFF 65
+PL+V RV+G+VLD FN + + VTY + V NG +L PS V +KPRVE+ G DLR+F+
Sbjct: 7 DPLIVSRVVGDVLDPFNRSITLKVTYGQRE-VTNGLDLRPSQVQNKPRVEIGGEDLRNFY 65
Query: 66 TLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISYESPKPNIGIHRFIFVLF 125
TLVM DPDVP PS+P+LRE+LHW+VTDIP TT +FG E++ YE+P P GIHR +F+LF
Sbjct: 66 TLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILF 125
Query: 126 KQKRRQTVIVPSFRDHFNTRRFAEENDLGLPVAAVYFNAQRETAARRR 173
+Q RQTV P +R +FNTR FAE +LGLPVAAV++N QRE+ R
Sbjct: 126 RQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRESGCGGR 173
>AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176
Length = 175
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 121/168 (72%), Gaps = 1/168 (0%)
Query: 6 EPLVVGRVIGEVLDTFNPCMKMIVTYNSNKLVFNGHELYPSAVVSKPRVEVQGGDLRSFF 65
+PLVVG V+G+VLD F + + VTY ++ V NG +L PS V++KP VE+ G D R+F+
Sbjct: 7 DPLVVGSVVGDVLDPFTRLVSLKVTY-GHREVTNGLDLRPSQVLNKPIVEIGGDDFRNFY 65
Query: 66 TLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISYESPKPNIGIHRFIFVLF 125
TLVM DPDVP PS+P+ RE+LHW+VTDIP TT +FG EV+ YESP+P GIHR + VLF
Sbjct: 66 TLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVLF 125
Query: 126 KQKRRQTVIVPSFRDHFNTRRFAEENDLGLPVAAVYFNAQRETAARRR 173
+Q RQTV P +R FNTR FAE +LGLPVAA YFN QRE R
Sbjct: 126 RQLGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRENGCGGR 173
>AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174
Length = 173
Score = 180 bits (457), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 120/175 (68%), Gaps = 4/175 (2%)
Query: 1 MSRSVEPLVVGRVIGEVLDTFNPCMKMIVTYNSNKLVFNGHELYPSAVVSKPRVEVQGGD 60
M+ SV+PLVVGRVIG+VLD F P M V Y K + NG E+ PS V+ P+V + G
Sbjct: 1 MAASVDPLVVGRVIGDVLDMFIPTANMSV-YFGPKHITNGCEIKPSTAVNPPKVNISGHS 59
Query: 61 LRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISYESPKPNIGIHRF 120
+TLVMTDPD P PS+P +RE +HWIV DIPG T+ S G+E++ Y P+P +GIHR+
Sbjct: 60 -DELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRY 118
Query: 121 IFVLFKQKRRQTVIV--PSFRDHFNTRRFAEENDLGLPVAAVYFNAQRETAARRR 173
I VLF+Q ++V P R +F+TR FA DLGLPVA VYFNAQ+E A+RRR
Sbjct: 119 ILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,978,792
Number of extensions: 174285
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 6
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)